Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021429

Physical Location & Seq

Genomic Coordinates Reverse (-)

2275759 .. 2277995

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAGGCCATATTGGTAACTAAGTCGGCCGGTCCAGATGAATTTCAAATACAAGAAGTGCCCATCCCAGACCTTAAAGGTGATGAAGTCTTAATAAAGGTCAAAGCTACTGCGGTCAATGGATCTGACTTAATTGAGAGAAAAAGGTTTTCAGGTGAAAGTTTGTGCATGGGAATTGAATGCTCAGGAACAATAGAGAAAATTGGGGAAAATGTGCAAAAATGGAATATTAATGATGAGCCAGAATTGCAAGTTTTTCCTCTACCAAGTACCACTACCTTGGAATCCGCTGCTTGTCTACCATATGCTGCATGCACGGTCTGGTCAGAACTTTTTACAACTAGTGAACTGTCTCCTTTCACCTTTTGGTTACCTAAAGATGGAGACATATTTAGGCCGAGGCTATCTGCTAGTGAAACACTTTTGGTTCATGATGACTCTAATGGAATTGCTAGTTTTGCAATTCAATTAGCTAAATGTGAAGGAGTAACCACGTTTGTGACATCAAGTGAAGACCGCAGAAAACATTATGGCGATCTTGGAGTTTATAAGTGGGTTGATTACAATGACTTTGTAGCACAAGAGGGCAAAGCTTTAGGTCAAGGTGTTGATGTGATTTTGAATGTTCTTGGGCCTGGACATTTTCAACGAAATTTATCTTGCTTGAATAAAGGTGGGAGGCTTATTTCCATTGGTGACTTTTGCACAAATAACATGGATTCTTTTGGAAGACTTCCAAAACTGGCGGATGATAGCCTATCGCGCAAACTCATTGGAGCGGCTGCCTTCCGACACAGGAGTAGAGTATCGAAGGAGTTGATCGTTAAGGAGGTGCAAGACAATGTGTGGCCTCATATTGAAAAAGGCATGTTGAAACCTTCATTCCACTCCAAAATTTTCACATTCTCTGAAGTAAAGGAGGCTCATCAGCTTATGGAAAGTGGCCAGCATTTTGGAAAAATACTGCTAGTTCCTGATGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

328

Amino Acids

36.31

Weight (kDa)

5.57

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 79	1.5e-08	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	149 - 232	2.5e-12	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	180 - 323	1.2e-17	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003651
rosa_laevigata	RLG00000031162
rosa_multiflora	Rmu_sc0023266.1_g000002
rosa_samantha	Rh5AG032300 Rh5CG035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AccBSI	CCGCTC	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	1 cut(s)	763
AciI	CCGC	5 cut(s)	113, 288, 517, 746, 779
AclWI	GGATC	1 cut(s)	130
AcoI	YGGCCR	2 cut(s)	27, 943
AcsI	RAATTY	3 cut(s)	41, 652, 894
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	8 cut(s)	47, 179, 467, 622, 647, 667, 860, 874
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	4 cut(s)	107, 473, 593, 931
AluI	AGCT	4 cut(s)	107, 473, 593, 931
Alw26I	GTCTC	2 cut(s)	357, 378
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	6 cut(s)	6, 27, 395, 632, 848, 943
ApeKI	GCWGC	3 cut(s)	290, 308, 782
ApoI	RAATTY	3 cut(s)	41, 652, 894
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	2 cut(s)	32, 632
AsuHPI	GGTGA	4 cut(s)	92, 167, 352, 707
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	945
BbsI	GAAGAC	2 cut(s)	519, 736
BbvI	GCAGC	3 cut(s)	277, 295, 769
BccI	CCATC	2 cut(s)	71, 374
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	2 cut(s)	357, 378
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	4 cut(s)	342, 411, 453, 968
BisI	GCNGC	4 cut(s)	291, 309, 780, 783
BlsI	GCNGC	4 cut(s)	292, 310, 781, 784
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 632
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	1 cut(s)	970
BpiI	GAAGAC	2 cut(s)	519, 736
Bpu10I	CCTNAGC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	279, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	279, 398
BseGI	GGATG	2 cut(s)	63, 754
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	747
BseSI	GKGCMC	1 cut(s)	63
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	277, 295, 769
Bsh1236I	CGCG	1 cut(s)	763
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	6 cut(s)	8, 29, 397, 634, 850, 945
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	357, 378
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	6 cut(s)	8, 29, 397, 634, 850, 945
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	122, 535, 819
BspACI	CCGC	5 cut(s)	113, 288, 517, 746, 779
BspANI	GGCC	6 cut(s)	8, 29, 397, 634, 850, 945
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	430
BspPI	GGATC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	779
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	747
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	279, 398
BssMI	GATC	3 cut(s)	122, 535, 819
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	319, 351
BstC8I	GCNNGC	2 cut(s)	313, 947
BstDEI	CTNAG	2 cut(s)	21, 184
BstEII	GGTNACC	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	63, 754
BstFNI	CGCG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	3 cut(s)	125, 538, 822
BstMAI	GTCTC	2 cut(s)	357, 378
BstMBI	GATC	3 cut(s)	122, 535, 819
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 458, 762
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	2 cut(s)	315, 871
BstPI	GGTNACC	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	763
BstV1I	GCAGC	3 cut(s)	277, 295, 769
BstV2I	GAAGAC	2 cut(s)	519, 736
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	2 cut(s)	280, 953
BstYI	RGATCY	1 cut(s)	122
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	6 cut(s)	8, 29, 397, 634, 850, 945
BtsCI	GGATG	2 cut(s)	63, 754
Cac8I	GCNNGC	2 cut(s)	313, 947
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	765
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	32, 632
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	5 cut(s)	169, 312, 431, 715, 868
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	21, 184
DpnI	GATC	3 cut(s)	124, 537, 821
DpnII	GATC	3 cut(s)	122, 535, 819
EaeI	YGGCCR	2 cut(s)	27, 943
EagI	CGGCCG	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	761
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	930
Eco91I	GGTNACC	1 cut(s)	369
EcoO65I	GGTNACC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	172, 315, 434, 718, 871
FatI	CATG	5 cut(s)	168, 311, 430, 714, 867
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	291, 309, 780, 783
FokI	GGATG	2 cut(s)	50, 761
Fsp4HI	GCNGC	4 cut(s)	291, 309, 780, 783
FspBI	CTAG	4 cut(s)	342, 411, 453, 968
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	4 cut(s)	291, 309, 780, 783
HaeIII	GGCC	6 cut(s)	8, 29, 397, 634, 850, 945
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	5 cut(s)	172, 315, 434, 718, 871
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	3 cut(s)	284, 437, 719
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	92, 167, 352, 707
Hpy166II	GTNNAC	2 cut(s)	299, 347
Hpy188I	TCNGA	4 cut(s)	127, 328, 791, 910
Hpy188III	TCNNGA	4 cut(s)	35, 186, 431, 974
Hpy8I	GTNNAC	2 cut(s)	299, 347
HpyAV	CCTTC	4 cut(s)	476, 796, 805, 888
HpyCH4III	ACNGT	2 cut(s)	319, 351
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	8 cut(s)	168, 217, 250, 311, 315, 461, 705, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 458, 762
HpyF3I	CTNAG	2 cut(s)	21, 184
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	172, 315, 434, 718, 871
HspAI	GCGC	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	122, 535, 819
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	3 cut(s)	277, 295, 769
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	4 cut(s)	342, 411, 453, 968
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	5 cut(s)	16, 369, 487, 499, 695
MalI	GATC	3 cut(s)	124, 537, 821
MbiI	CCGCTC	1 cut(s)	779
MboI	GATC	3 cut(s)	122, 535, 819
MboII	GAAGA	2 cut(s)	524, 741
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	945
MluNI	TGGCCA	1 cut(s)	945
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	7 cut(s)	270, 393, 577, 672, 823, 861, 913
Mox20I	TGGCCA	1 cut(s)	945
MscI	TGGCCA	1 cut(s)	945
MseI	TTAA	6 cut(s)	75, 92, 131, 231, 825, 985
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	763
MwoI	GCNNNNNNNGC	3 cut(s)	247, 458, 762
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	122, 535, 819
NlaIII	CATG	5 cut(s)	172, 315, 434, 718, 871
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	499, 695
NspI	RCATGY	2 cut(s)	315, 871
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	315
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	284, 719
PkrI	GCNGC	4 cut(s)	292, 310, 781, 784
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	634
PspPI	GGNCC	2 cut(s)	32, 632
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	6 cut(s)	75, 92, 131, 231, 825, 985
SatI	GCNGC	4 cut(s)	291, 309, 780, 783
Sau3AI	GATC	3 cut(s)	122, 535, 819
Sau96I	GGNCC	2 cut(s)	32, 632
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	970
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	497
SpeI	ACTAGT	1 cut(s)	341
SphI	GCATGC	1 cut(s)	315
SsiI	CCGC	5 cut(s)	113, 288, 517, 746, 779
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	4 cut(s)	342, 411, 453, 968
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	319, 351
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	809
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	284, 719
Tru1I	TTAA	6 cut(s)	75, 92, 131, 231, 825, 985
Tru9I	TTAA	6 cut(s)	75, 92, 131, 231, 825, 985
TseFI	GTSAC	2 cut(s)	499, 695
TseI	GCWGC	3 cut(s)	290, 308, 782
Tsp45I	GTSAC	2 cut(s)	499, 695
TspDTI	ATGAA	5 cut(s)	17, 54, 99, 419, 870
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	3 cut(s)	41, 652, 894
XceI	RCATGY	2 cut(s)	315, 871
XmiI	GTMKAC	1 cut(s)	298
XspI	CTAG	4 cut(s)	342, 411, 453, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.