Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0021429

Physical Location & Seq

Genomic Coordinates Reverse (-)

2233338 .. 2235442

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG035000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAGGCCATATTGGTAACTAAGTCGGCCGGTCCAGATGAATTTCAAATACAAGAAGTGCCCATCCCAGACCTTAAAGGTGATGAAGTCTTAATAAAGGTCAAAGCTACTGCGGTCAATGGATCTGACTTAATTGAGAGAAAAAGGTTTTCGGTTGAAAGTTTGTGCATGGGAATTGAATGCTCAGGAACAATAGAGAAAATTGGGGAAAATGTGCAAAAATGGAATATTAATGATGAGGTATGTGCGGTTCTTAGTGGTGGGGGATATGCTGAGAAAGTGGCTGTACCAGAATTGCAAGTTTTTCCTCTACCAAGTACCACTACCTTGGAATCCGCTGCTTGTCTACCATATGCTGCATGCACGGTCTGGTCAGAACTTTTTACAACTAGTGAACTGTCTCCTTTCACCTTTTGGTTACCTAAAGATGGAGACATATTTAGGCCGAGGCTATCTGCTAGTGAAACACTTTTGGTTCATGATGACTCTAATGGAATTGCTAGTTTTGCAATTCAATTAGCTAAATGTGAAGGAGTAACCACGTTTGTGACATCAAGTGAAGACCGCAGAAAACATTATGGCGATCTTGGAGTTTATAAGTGGGTTGATTACAATGACTTTGTAGCACAAGAGGGCAAAGCTTTAGGTCAAGGTGTTGATGTGATTTTGAATGTTCTTGGGCCTGGACATTTTCAACGAAATTTATCTTGCTTGAATAAAGGTGGGAGGCTTATTTCCATTGGTGACTTTTGCACAAATAACATGGATTCTTTTGGAAGACTTCCAAAACTGGCGGATGATAGCCTATCGCGCAAACTCATTGGAGCGGCTGCCTTCCGACACAGGAGTAGAGTATCGAAGGAGTTGATCGTTAAGGAGGTGCAAGACAATGTGTGGCCTCATATTGAAAAAGGCATGTTGAAACCTTCATTCCACTCCAAAATTTTCACATTCTCTGAAGTAAAGGAGGCTCATCAGCTTATGGAAAGTGGCCAGCATTTTGGAAAAATACTGCTAGTTCCTGATGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

344

Amino Acids

37.85

Weight (kDa)

5.57

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 105	3.6e-13	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	165 - 248	2.7e-12	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	196 - 339	1.4e-17	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003651
rosa_laevigata	RLG00000031162
rosa_multiflora	Rmu_sc0023266.1_g000002
rosa_samantha	Rh5AG032300 Rh5CG035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccBSI	CCGCTC	1 cut(s)	827
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	1 cut(s)	811
AciI	CCGC	6 cut(s)	113, 248, 336, 565, 794, 827
AclWI	GGATC	1 cut(s)	130
AcoI	YGGCCR	2 cut(s)	27, 991
AcsI	RAATTY	3 cut(s)	41, 700, 942
AcuI	CTGAAG	1 cut(s)	978
AfaI	GTAC	2 cut(s)	288, 319
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	9 cut(s)	47, 158, 179, 515, 670, 695, 715, 908, 922
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	4 cut(s)	107, 521, 641, 979
AluI	AGCT	4 cut(s)	107, 521, 641, 979
Alw26I	GTCTC	2 cut(s)	405, 426
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	6 cut(s)	6, 27, 443, 680, 896, 991
ApeKI	GCWGC	3 cut(s)	338, 356, 830
ApoI	RAATTY	3 cut(s)	41, 700, 942
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	2 cut(s)	32, 680
AsuHPI	GGTGA	3 cut(s)	92, 400, 755
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	993
BbsI	GAAGAC	2 cut(s)	567, 784
BbvI	GCAGC	3 cut(s)	325, 343, 817
BccI	CCATC	2 cut(s)	71, 422
BciT130I	CCWGG	1 cut(s)	684
BcoDI	GTCTC	2 cut(s)	405, 426
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	4 cut(s)	390, 459, 501, 1016
BisI	GCNGC	4 cut(s)	339, 357, 828, 831
BlsI	GCNGC	4 cut(s)	340, 358, 829, 832
Bme1390I	CCNGG	1 cut(s)	684
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 680
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	1018
BpiI	GAAGAC	2 cut(s)	567, 784
Bpu10I	CCTNAGC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	327, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	327, 446
BseGI	GGATG	2 cut(s)	63, 802
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	198, 264
BseNI	ACTGG	1 cut(s)	795
BseSI	GKGCMC	1 cut(s)	63
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	325, 343, 817
Bsh1236I	CGCG	1 cut(s)	811
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	6 cut(s)	8, 29, 445, 682, 898, 993
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	405, 426
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	6 cut(s)	8, 29, 445, 682, 898, 993
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	122, 583, 867
BspACI	CCGC	6 cut(s)	113, 248, 336, 565, 794, 827
BspANI	GGCC	6 cut(s)	8, 29, 445, 682, 898, 993
BspCNI	CTCAG	2 cut(s)	197, 265
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	478
BspPI	GGATC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	827
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	795
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	327, 446
BssMI	GATC	3 cut(s)	122, 583, 867
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	367, 399
BstC8I	GCNNGC	2 cut(s)	361, 995
BstDEI	CTNAG	4 cut(s)	21, 184, 254, 273
BstEII	GGTNACC	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	63, 802
BstFNI	CGCG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	125, 586, 870
BstMAI	GTCTC	2 cut(s)	405, 426
BstMBI	GATC	3 cut(s)	122, 583, 867
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 810
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	2 cut(s)	363, 919
BstPI	GGTNACC	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	682
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	3 cut(s)	325, 343, 817
BstV2I	GAAGAC	2 cut(s)	567, 784
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	2 cut(s)	328, 1001
BstYI	RGATCY	1 cut(s)	122
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	6 cut(s)	8, 29, 445, 682, 898, 993
BtsCI	GGATG	2 cut(s)	63, 802
Cac8I	GCNNGC	2 cut(s)	361, 995
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	813
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	32, 680
Csp6I	GTAC	2 cut(s)	287, 318
CviAII	CATG	5 cut(s)	169, 360, 479, 763, 916
CviQI	GTAC	2 cut(s)	287, 318
DdeI	CTNAG	4 cut(s)	21, 184, 254, 273
DpnI	GATC	3 cut(s)	124, 585, 869
DpnII	GATC	3 cut(s)	122, 583, 867
EaeI	YGGCCR	2 cut(s)	27, 991
EagI	CGGCCG	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	809
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	978
Eco91I	GGTNACC	1 cut(s)	417
EcoO65I	GGTNACC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	5 cut(s)	172, 363, 482, 766, 919
FatI	CATG	5 cut(s)	168, 359, 478, 762, 915
FauNDI	CATATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	339, 357, 828, 831
FokI	GGATG	2 cut(s)	50, 809
Fsp4HI	GCNGC	4 cut(s)	339, 357, 828, 831
FspBI	CTAG	4 cut(s)	390, 459, 501, 1016
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	4 cut(s)	339, 357, 828, 831
HaeIII	GGCC	6 cut(s)	8, 29, 445, 682, 898, 993
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	5 cut(s)	172, 363, 482, 766, 919
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	332, 485, 767
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	3 cut(s)	92, 400, 755
Hpy166II	GTNNAC	2 cut(s)	347, 395
Hpy188I	TCNGA	4 cut(s)	127, 376, 839, 958
Hpy188III	TCNNGA	4 cut(s)	35, 186, 479, 1022
Hpy8I	GTNNAC	2 cut(s)	347, 395
HpyAV	CCTTC	4 cut(s)	524, 844, 853, 936
HpyCH4III	ACNGT	2 cut(s)	367, 399
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	8 cut(s)	168, 217, 298, 359, 363, 509, 753, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 810
HpyF3I	CTNAG	4 cut(s)	21, 184, 254, 273
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	172, 363, 482, 766, 919
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	122, 583, 867
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	3 cut(s)	325, 343, 817
LweI	GCATC	1 cut(s)	1018
MaeI	CTAG	4 cut(s)	390, 459, 501, 1016
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	5 cut(s)	16, 417, 535, 547, 743
MalI	GATC	3 cut(s)	124, 585, 869
MbiI	CCGCTC	1 cut(s)	827
MboI	GATC	3 cut(s)	122, 583, 867
MboII	GAAGA	2 cut(s)	572, 789
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	993
MluNI	TGGCCA	1 cut(s)	993
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	862
MnlI	CCTC	8 cut(s)	232, 318, 441, 625, 720, 871, 909, 961
Mox20I	TGGCCA	1 cut(s)	993
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	6 cut(s)	75, 92, 131, 231, 873, 1033
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	993
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	2 cut(s)	506, 810
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	122, 583, 867
NlaIII	CATG	5 cut(s)	172, 363, 482, 766, 919
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	2 cut(s)	547, 743
NspI	RCATGY	2 cut(s)	363, 919
OliI	CACNNNNGTG	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	363
PagI	TCATGA	1 cut(s)	478
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	332, 767
PkrI	GCNGC	4 cut(s)	340, 358, 829, 832
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	682
PspEI	GGTNACC	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	682
PspPI	GGNCC	2 cut(s)	32, 680
PsrI	GAACNNNNNNTAC	2 cut(s)	234, 266
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	2 cut(s)	288, 319
RsaNI	GTAC	2 cut(s)	287, 318
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	6 cut(s)	75, 92, 131, 231, 873, 1033
SatI	GCNGC	4 cut(s)	339, 357, 828, 831
Sau3AI	GATC	3 cut(s)	122, 583, 867
Sau96I	GGNCC	2 cut(s)	32, 680
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	1018
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	389
SphI	GCATGC	1 cut(s)	363
SsiI	CCGC	6 cut(s)	113, 248, 336, 565, 794, 827
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	4 cut(s)	390, 459, 501, 1016
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	367, 399
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	857
TauI	GCSGC	1 cut(s)	830
TfiI	GAWTC	2 cut(s)	332, 767
Tru1I	TTAA	6 cut(s)	75, 92, 131, 231, 873, 1033
Tru9I	TTAA	6 cut(s)	75, 92, 131, 231, 873, 1033
TseFI	GTSAC	2 cut(s)	547, 743
TseI	GCWGC	3 cut(s)	338, 356, 830
Tsp45I	GTSAC	2 cut(s)	547, 743
TspDTI	ATGAA	5 cut(s)	17, 54, 99, 467, 918
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	3 cut(s)	41, 700, 942
XceI	RCATGY	2 cut(s)	363, 919
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	4 cut(s)	390, 459, 501, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.