Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0021429

Physical Location & Seq

Genomic Coordinates Reverse (-)

2636336 .. 2637820

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGGCCATATTGGTAACTAAGTCGGCCGGTCCAGATGAATTTCAAATACAAGAAGTGTCCATCCCAGACCTTAAAGGTGATGAAGTCTTAATAAAGGTCAAAGCTACTGCGGTCAATGGATCTGACTTAATTGAGAGGAAAAGGTTTTCAGGTGAAAGTTTGTGCATGGGAATTGAATGCTCAGGAACAATAGAGGAAATTGGGGAAAATGTGCAAAAATGGAATATTAATGATGAGGTATGTGCGGTTCTTAGTGGTGGGGGGTATGCTGAGAAAGTGGCTGTACCAGAATTGCAAGTTTTTCCTCTACCAAGTACCACTACCTTGGAATCCGCTGCTTGTCTACCATATGCTGCATGCACGGTCTGGTCAGAACTTTTTACAACTAGTGAACTGTCTTCTTTCACCTTTTGGTTACCTAAAGATGGAGACATTTTTAGGCCGAGGCTATCTGCTAGTGAAACACTTTTGGTTCATGATGACTCTAATGGAATTGCTAGTTTTGCAATTCAATTAGCTAAATGTGAAGGAGTAACCACGTTTGTGACATCAAGTGAAGACCGCAGAAAACATTATGGCGATCTTGGAGTTTATAAGTGGGTTGATTACAATGACTTTGTAGCACAAGAGGGCAAAGCTTTAGGTCAAGGTGTTGATGTGATTTTGAATGTTCTTGGGCCTGAACATTTTCAACGAAATTTATCTTGCTTGAATAAAGGTGGGAGGCTTATTTCCATTGGTGACTTTTGCACAAATAAGACGGATTCTTTTGGAAGACTTCCAAAAGTGGCGGATGATAGCCTATCGCGCAAACTCGTTGGAGGTACTATACTCGAATTTATACTTGCAAAAGGGGAAAGAAAAGAAATTAAACTAGAATTTATGGTATGGTTGGGTGGATTTGGTTTATATCATTCAAGGTTCCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

312

Amino Acids

34.13

Weight (kDa)

5.13

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 105	2e-13	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	165 - 249	4e-13	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	196 - 250	7.4e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003651
rosa_laevigata	RLG00000031162
rosa_multiflora	Rmu_sc0023266.1_g000002
rosa_samantha	Rh5AG032300 Rh5CG035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	1 cut(s)	811
AciI	CCGC	5 cut(s)	113, 248, 336, 565, 794
AclWI	GGATC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	41, 700, 839, 881
AfaI	GTAC	3 cut(s)	288, 319, 829
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	7 cut(s)	47, 179, 515, 670, 695, 715, 921
AhlI	ACTAGT	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	3 cut(s)	107, 521, 641
AluI	AGCT	3 cut(s)	107, 521, 641
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	4 cut(s)	6, 27, 443, 680
ApeKI	GCWGC	2 cut(s)	338, 356
ApoI	RAATTY	4 cut(s)	41, 700, 839, 881
AseI	ATTAAT	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	2 cut(s)	32, 680
AsuHPI	GGTGA	4 cut(s)	92, 167, 400, 755
AvaII	GGWCC	1 cut(s)	32
BbsI	GAAGAC	3 cut(s)	393, 567, 784
BbvI	GCAGC	2 cut(s)	325, 343
BccI	CCATC	2 cut(s)	71, 422
BcoDI	GTCTC	1 cut(s)	426
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	4 cut(s)	390, 459, 501, 878
BisI	GCNGC	2 cut(s)	339, 357
BlsI	GCNGC	2 cut(s)	340, 358
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 680
BmiI	GGNNCC	1 cut(s)	926
BpiI	GAAGAC	3 cut(s)	393, 567, 784
Bpu10I	CCTNAGC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	327, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	327, 446
BseGI	GGATG	2 cut(s)	63, 802
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	198, 264
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	325, 343
Bsh1236I	CGCG	1 cut(s)	811
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	4 cut(s)	8, 29, 445, 682
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	8, 29, 445, 682
Bsp143I	GATC	2 cut(s)	122, 583
BspACI	CCGC	5 cut(s)	113, 248, 336, 565, 794
BspANI	GGCC	4 cut(s)	8, 29, 445, 682
BspCNI	CTCAG	2 cut(s)	197, 265
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	926
BspPI	GGATC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	327, 446
BssMI	GATC	2 cut(s)	122, 583
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	367, 399
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	4 cut(s)	21, 184, 254, 273
BstEII	GGTNACC	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	63, 802
BstFNI	CGCG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	2 cut(s)	125, 586
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	122, 583
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 810
BstNSI	RCATGY	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	2 cut(s)	325, 343
BstV2I	GAAGAC	3 cut(s)	393, 567, 784
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	122
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	8, 29, 445, 682
BtsCI	GGATG	2 cut(s)	63, 802
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	813
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	32, 680
Csp6I	GTAC	3 cut(s)	287, 318, 828
CviAII	CATG	3 cut(s)	169, 360, 479
CviQI	GTAC	3 cut(s)	287, 318, 828
DdeI	CTNAG	4 cut(s)	21, 184, 254, 273
DpnI	GATC	2 cut(s)	124, 585
DpnII	GATC	2 cut(s)	122, 583
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	809
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	417
EcoO65I	GGTNACC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	3 cut(s)	172, 363, 482
FatI	CATG	3 cut(s)	168, 359, 478
FauNDI	CATATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	339, 357
FokI	GGATG	2 cut(s)	50, 809
Fsp4HI	GCNGC	2 cut(s)	339, 357
FspBI	CTAG	4 cut(s)	390, 459, 501, 878
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	2 cut(s)	339, 357
HaeIII	GGCC	4 cut(s)	8, 29, 445, 682
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	3 cut(s)	172, 363, 482
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	332, 485, 767
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	92, 167, 400, 755
Hpy166II	GTNNAC	2 cut(s)	347, 395
Hpy188I	TCNGA	2 cut(s)	127, 376
Hpy188III	TCNNGA	3 cut(s)	35, 186, 479
Hpy8I	GTNNAC	2 cut(s)	347, 395
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	367, 399
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	8 cut(s)	168, 217, 298, 359, 363, 509, 753, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 810
HpyF3I	CTNAG	4 cut(s)	21, 184, 254, 273
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	3 cut(s)	172, 363, 482
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	2 cut(s)	122, 583
LpnPI	CCDG	8 cut(s)	43, 48, 81, 138, 171, 303, 355, 696
Lsp1109I	GCAGC	2 cut(s)	325, 343
MaeI	CTAG	4 cut(s)	390, 459, 501, 878
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	5 cut(s)	16, 417, 535, 547, 743
MalI	GATC	2 cut(s)	124, 585
MboI	GATC	2 cut(s)	122, 583
MboII	GAAGA	3 cut(s)	393, 572, 789
MflI	RGATCY	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	8 cut(s)	132, 190, 232, 318, 441, 625, 720, 818
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	6 cut(s)	75, 92, 131, 231, 873, 934
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	185
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	2 cut(s)	506, 810
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	2 cut(s)	122, 583
NlaIII	CATG	3 cut(s)	172, 363, 482
NlaIV	GGNNCC	1 cut(s)	926
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	2 cut(s)	547, 743
NspI	RCATGY	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	363
PagI	TCATGA	1 cut(s)	478
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	332, 767
PkrI	GCNGC	2 cut(s)	340, 358
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	926
PspPI	GGNCC	2 cut(s)	32, 680
PsrI	GAACNNNNNNTAC	2 cut(s)	234, 266
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	3 cut(s)	288, 319, 829
RsaNI	GTAC	3 cut(s)	287, 318, 828
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	6 cut(s)	75, 92, 131, 231, 873, 934
SatI	GCNGC	2 cut(s)	339, 357
Sau3AI	GATC	2 cut(s)	122, 583
Sau96I	GGNCC	2 cut(s)	32, 680
SchI	GAGTC	1 cut(s)	479
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	389
SphI	GCATGC	1 cut(s)	363
SsiI	CCGC	5 cut(s)	113, 248, 336, 565, 794
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	4 cut(s)	390, 459, 501, 878
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	367, 399
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	837
TfiI	GAWTC	2 cut(s)	332, 767
Tru1I	TTAA	6 cut(s)	75, 92, 131, 231, 873, 934
Tru9I	TTAA	6 cut(s)	75, 92, 131, 231, 873, 934
TseFI	GTSAC	2 cut(s)	547, 743
TseI	GCWGC	2 cut(s)	338, 356
Tsp45I	GTSAC	2 cut(s)	547, 743
TspDTI	ATGAA	4 cut(s)	17, 54, 99, 467
TspGWI	ACGGA	1 cut(s)	779
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	4 cut(s)	41, 700, 839, 881
XceI	RCATGY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	4 cut(s)	390, 459, 501, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.