Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0021429

Physical Location & Seq

Genomic Coordinates Reverse (-)

2233339 .. 2234520

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG032300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCAGGTTCATGATGACTCTAATGGAATTGCTAGTTTTGCAATTCAATTAGCTAAATGTGAAGGAGTAACCACGTTTGTGACATCAAGTGAAGACCGCAGAAAACATTATGGCGATCTTGGAGTTTATAAGTGGGTTGATTACAATGACTTTGTAGCACAAGAGGGCAAAGCTTTAGGTCAAGGTGTTGATGTGATTTTGAATGTTCTTGGGCCTGGACATTTTCAACGAAATTTATCTTGCTTGAATAAAGGTGGGAGGCTTATTTCCATTGGTGACTTTTGCACAAATAACATGGATTCTTTTGGAAGACTTCCAAAACTGGCGGATGATAGCCTATCGCGCAAACTCATTGGAGCGGCTGCCTTCCGACACAGGAGTAGAGTATCGAAGGAGTTGATCGTTAAGGAGGTGCAAGACAATGTGTGGCCTCATATTGAAAAAGGCATGTTGAAACCTTCATTCCACTCCAAAATTTTCACATTCTCTGAAGTAAAGGAGGCTCATCAGCTTATGGAAAGTGGCCAGCATTTTGGAAAAATACTGCTAGTTCCTGATGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

188

Amino Acids

20.93

Weight (kDa)

7.09

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	9 - 93	6.6e-13	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	40 - 183	2.6e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0003651
rosa_laevigata	RLG00000031162
rosa_multiflora	Rmu_sc0023266.1_g000002
rosa_samantha	Rh5AG032300 Rh5CG035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	359
AccII	CGCG	1 cut(s)	343
AciI	CCGC	3 cut(s)	97, 326, 359
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	232, 474
AcuI	CTGAAG	1 cut(s)	510
AgsI	TTSAA	6 cut(s)	47, 202, 227, 247, 440, 454
AjnI	CCWGG	1 cut(s)	214
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	53, 173, 511
AluI	AGCT	3 cut(s)	53, 173, 511
AoxI	GGCC	3 cut(s)	212, 428, 523
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	232, 474
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	99, 316
BbvI	GCAGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	2 cut(s)	33, 548
BisI	GCNGC	2 cut(s)	360, 363
BlsI	GCNGC	2 cut(s)	361, 364
Bme1390I	CCNGG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	2 cut(s)	99, 316
Bse1I	ACTGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	3 cut(s)	214, 430, 525
BsnI	GGCC	3 cut(s)	214, 430, 525
Bsp143I	GATC	2 cut(s)	115, 399
BspACI	CCGC	3 cut(s)	97, 326, 359
BspANI	GGCC	3 cut(s)	214, 430, 525
BspFNI	CGCG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	115, 399
Bst2UI	CCWGG	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	527
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	118, 402
BstMBI	GATC	2 cut(s)	115, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 342
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	99, 316
BstXI	CCANNNNNNTGG	1 cut(s)	533
BsuRI	GGCC	3 cut(s)	214, 430, 525
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	527
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	3 cut(s)	11, 295, 448
DpnI	GATC	2 cut(s)	117, 401
DpnII	GATC	2 cut(s)	115, 399
EaeI	YGGCCR	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	14, 298, 451
FaiI	YATR	7 cut(s)	12, 111, 129, 296, 435, 449, 515
FatI	CATG	3 cut(s)	10, 294, 447
Fnu4HI	GCNGC	2 cut(s)	360, 363
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	360, 363
FspBI	CTAG	2 cut(s)	33, 548
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	360, 363
HaeIII	GGCC	3 cut(s)	214, 430, 525
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	14, 298, 451
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	2 cut(s)	17, 299
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	371, 490
Hpy188III	TCNNGA	2 cut(s)	11, 554
HpyAV	CCTTC	4 cut(s)	56, 376, 385, 468
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	4, 41, 285, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 342
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	14, 298, 451
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	115, 399
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	5 cut(s)	201, 228, 308, 361, 539
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	33, 548
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	3 cut(s)	67, 79, 275
MalI	GATC	2 cut(s)	117, 401
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	115, 399
MboII	GAAGA	2 cut(s)	104, 321
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	5 cut(s)	27, 42, 47, 232, 474
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	5 cut(s)	157, 252, 403, 441, 493
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	405, 565
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	38, 342
NdeII	GATC	2 cut(s)	115, 399
NlaIII	CATG	3 cut(s)	14, 298, 451
NmuCI	GTSAC	2 cut(s)	79, 275
NspI	RCATGY	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	361, 364
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	405, 565
SatI	GCNGC	2 cut(s)	360, 363
Sau3AI	GATC	2 cut(s)	115, 399
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	27, 42, 47, 232, 474
SsiI	CCGC	3 cut(s)	97, 326, 359
SspMI	CTAG	2 cut(s)	33, 548
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	389
TasI	AATT	5 cut(s)	27, 42, 47, 232, 474
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	405, 565
Tru9I	TTAA	2 cut(s)	405, 565
TseFI	GTSAC	2 cut(s)	79, 275
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	79, 275
TspDTI	ATGAA	1 cut(s)	450
XapI	RAATTY	2 cut(s)	232, 474
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	2 cut(s)	33, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.