RchiOBHm_Chr5g0013061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018394
Physical Location & Seq
Reverse (-)
8854313 .. 8855350
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
ATGGAGGATACTGCAGGAAGAAGAAAATGGGCCAAGTTAGAGGTGGACTGCTTAACCAATGTGTTTGGAAGACTAGGAATGGAGCCACTGCTTATGAATGTGCCTTTTGTCTGCAAATCATGGCACAAAGCAACCCAGGATCCTCTGTGCTGGCAAAACCTCTCATTCCCAGAGTTTTTACCACTACTCGAACCCAAGAGTCTCGGCCCGGAGCCATTTTACTACAAGTTTGTTGATAAATGTCAAGTCAAGAAGAACACTACTTTCTCCATCAGTGCTTTTGTAAGGATGGTAGTGGCTCGTAGCCACGGAAAGGCCATCGAGATCAAACTCCCTGGCTTTATAACTGAAGAAACCTTGAGGTACGTTTCGGATGCATGTCCCGGGATTAGGGTTTTGTGCATGCCAGATGATATAGTCATTTTTAAGCATTCTAGGCTTATTGCGAAATTGATTGGCAAGTGGAAGATGTTGGAGCAATTGCATTTGGGCGGCAACCTCAAGAAGATTGTCACACTTCGAGCACAATTGGATAAGCAAAGGACAAATGATTTGTTTGCAATGGGAGATTATTGTTCGTGTGAAACCATATTGGACGAGATCGTGATGCAGATTGGCATTCACTGCAATCATTTTGTGGGTCTCAGAATCGCTCATGCTTATGTTGATGAAGTAGAGGCATCGATTATTGCGGAATCGTTGCCGAATCTTAAGTACTTGTGGGTTGAAGAGTCTCACTTTGAAGGGGACAGTCTTGTCACGCTAGTGCGGGGCTGCAAACAACTTGAGGTTTTGGATGTCACTGACTGTGGAGAACTTGAAGACAGTGATGGTGATATGAAGGAAATAGCAACCCTTGCTAAGGGTTATGGTATTGAATTTCTATGGCAAGGTGGACGTGAAGATGCTGATTATTGTGGTCTTGATTTTCAGAACCGGTCGAGGAAGTTGCTTTTAACCAAGGTTCGTGTGAGACAATGTCCGCGGATGAGCACCGGTGGAATGGCACCATCGAGGCTCCTAGCTCATAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

39.19

Weight (kDa)

7.08

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06260
rosa_chinensis RchiOBHm_Chr5g0013061
rosa_laevigata RLG00000031981
rosa_multiflora Rmu_sc0003892.1_g000016
rosa_roxburghii Rroxscaffold_1G00063520
rosa_rugosa Rorug05G0006900
rosa_samantha Rh5BG097500 Rh5CG109600 Rh5DG096500
rosa_wichuraiana Rw5G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AasI GACNNNNNNGTC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 1006
AccII CGCG 1 cut(s) 985
AciI CCGC 5 cut(s) 492, 692, 769, 983, 985
AclWI GGATC 2 cut(s) 134, 147
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 365, 716
AfiI CCNNNNNNNGG 3 cut(s) 313, 390, 862
AflII CTTAAG 1 cut(s) 710
AgeI ACCGGT 2 cut(s) 936, 995
AgsI TTSAA 4 cut(s) 728, 743, 821, 878
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 2 cut(s) 135, 334
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 1 cut(s) 1025
AluI AGCT 1 cut(s) 1025
Alw21I GWGCWC 2 cut(s) 526, 995
Alw26I GTCTC 4 cut(s) 206, 647, 738, 967
AlwI GGATC 2 cut(s) 134, 147
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 3 cut(s) 30, 205, 315
ApeKI GCWGC 1 cut(s) 774
ApoI RAATTY 1 cut(s) 878
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AsiGI ACCGGT 2 cut(s) 936, 995
AspS9I GGNCC 2 cut(s) 30, 206
AsuC2I CCSGG 3 cut(s) 209, 384, 385
AsuHPI GGTGA 1 cut(s) 845
AvaI CYCGRG 1 cut(s) 383
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 1006
BbsI GAAGAC 2 cut(s) 76, 828
Bbv12I GWGCWC 2 cut(s) 526, 995
BbvI GCAGC 1 cut(s) 761
BccI CCATC 5 cut(s) 278, 283, 326, 824, 1018
BcgI CGANNNNNNTGC 2 cut(s) 931, 965
BciT130I CCWGG 2 cut(s) 137, 336
BcnI CCSGG 3 cut(s) 209, 384, 385
BcoDI GTCTC 4 cut(s) 206, 647, 738, 967
BfaI CTAG 4 cut(s) 74, 435, 764, 1022
BfmI CTRYAG 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 710
BisI GCNGC 2 cut(s) 493, 775
BlsI GCNGC 2 cut(s) 494, 776
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 5 cut(s) 137, 209, 336, 384, 385
BmeT110I CYCGRG 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 2 cut(s) 30, 206
BmiI GGNNCC 5 cut(s) 84, 141, 213, 1008, 1019
BmrFI CCNGG 5 cut(s) 137, 209, 336, 384, 385
BmsI GCATC 4 cut(s) 364, 597, 689, 895
BpiI GAAGAC 2 cut(s) 76, 828
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 3 cut(s) 379, 485, 806
BpuMI CCSGG 3 cut(s) 209, 384, 385
Bsa29I ATCGAT 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 6 cut(s) 135, 307, 334, 383, 960, 983
BsaWI WCCGGW 2 cut(s) 936, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 390, 862
Bse118I RCCGGY 2 cut(s) 936, 995
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 2 cut(s) 137, 336
BseCI ATCGAT 1 cut(s) 683
BseDI CCNNGG 6 cut(s) 135, 307, 334, 383, 960, 983
BseGI GGATG 4 cut(s) 294, 379, 802, 993
BseLI CCNNNNNNNGG 3 cut(s) 313, 390, 862
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 658
BseXI GCAGC 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 985
Bsh1285I CGRYCG 1 cut(s) 941
BshFI GGCC 3 cut(s) 32, 207, 317
BshNI GGYRCC 1 cut(s) 1006
BshTI ACCGGT 2 cut(s) 936, 995
BshVI ATCGAT 1 cut(s) 683
BsiEI CGRYCG 1 cut(s) 941
BsiHKAI GWGCWC 2 cut(s) 526, 995
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 4 cut(s) 209, 384, 937, 996
BslFI GGGAC 2 cut(s) 366, 761
BslI CCNNNNNNNGG 3 cut(s) 313, 390, 862
BsmAI GTCTC 4 cut(s) 206, 647, 738, 967
BsmFI GGGAC 2 cut(s) 366, 761
BsmI GAATGC 2 cut(s) 430, 618
BsnI GGCC 3 cut(s) 32, 207, 317
Bso31I GGTCTC 1 cut(s) 647
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 526, 995
Bsp143I GATC 3 cut(s) 139, 324, 600
BspACI CCGC 5 cut(s) 492, 692, 769, 983, 985
BspANI GGCC 3 cut(s) 32, 207, 317
BspCNI CTCAG 1 cut(s) 657
BspDI ATCGAT 1 cut(s) 683
BspFNI CGCG 1 cut(s) 985
BspLI GGNNCC 5 cut(s) 84, 141, 213, 1008, 1019
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 1 cut(s) 1006
BspTI CTTAAG 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 2 cut(s) 936, 995
BssAI RCCGGY 2 cut(s) 936, 995
BssECI CCNNGG 6 cut(s) 135, 307, 334, 383, 960, 983
BssMI GATC 3 cut(s) 139, 324, 600
BssT1I CCWWGG 1 cut(s) 960
Bst2UI CCWGG 2 cut(s) 137, 336
Bst4CI ACNGT 3 cut(s) 752, 809, 827
Bst6I CTCTTC 1 cut(s) 723
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 2 cut(s) 624, 857
BstC8I GCNNGC 2 cut(s) 152, 404
BstDEI CTNAG 2 cut(s) 644, 861
BstDSI CCRYGG 2 cut(s) 307, 983
BstENI CCTNNNNNAGG 1 cut(s) 860
BstF5I GGATG 4 cut(s) 294, 379, 802, 993
BstFNI CGCG 1 cut(s) 985
BstKTI GATC 3 cut(s) 142, 327, 603
BstMAI GTCTC 4 cut(s) 206, 647, 738, 967
BstMBI GATC 3 cut(s) 139, 324, 600
BstMCI CGRYCG 1 cut(s) 941
BstMWI GCNNNNNNNGC 3 cut(s) 436, 624, 857
BstNI CCWGG 2 cut(s) 137, 336
BstNSI RCATGY 2 cut(s) 381, 406
BstSCI CCNGG 5 cut(s) 135, 207, 334, 382, 383
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 985
BstV1I GCAGC 1 cut(s) 761
BstV2I GAAGAC 2 cut(s) 76, 828
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 683
BsuRI GGCC 3 cut(s) 32, 207, 317
BsuTUI ATCGAT 1 cut(s) 683
BtgI CCRYGG 2 cut(s) 307, 983
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 4 cut(s) 294, 379, 802, 993
BtsI GCAGTG 2 cut(s) 86, 622
BtsIMutI CAGTG 5 cut(s) 86, 280, 622, 801, 832
Cac8I GCNNGC 2 cut(s) 152, 404
Cfr10I RCCGGY 2 cut(s) 936, 995
Cfr13I GGNCC 2 cut(s) 30, 206
Cfr42I CCGCGG 1 cut(s) 986
Cfr9I CCCGGG 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 683
Csp6I GTAC 2 cut(s) 364, 715
CspAI ACCGGT 2 cut(s) 936, 995
CviAII CATG 4 cut(s) 120, 378, 403, 656
CviQI GTAC 2 cut(s) 364, 715
DdeI CTNAG 2 cut(s) 644, 861
DpnI GATC 3 cut(s) 141, 326, 602
DpnII GATC 3 cut(s) 139, 324, 600
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 860
EcoRII CCWGG 2 cut(s) 135, 334
EcoT14I CCWWGG 1 cut(s) 960
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 4 cut(s) 123, 381, 406, 659
FaqI GGGAC 2 cut(s) 366, 761
FatI CATG 4 cut(s) 119, 377, 402, 655
FauI CCCGC 1 cut(s) 762
Fnu4HI GCNGC 2 cut(s) 493, 775
FokI GGATG 4 cut(s) 301, 386, 809, 1000
Fsp4HI GCNGC 2 cut(s) 493, 775
FspBI CTAG 4 cut(s) 74, 435, 764, 1022
GluI GCNGC 2 cut(s) 493, 775
HaeIII GGCC 3 cut(s) 32, 207, 317
HapII CCGG 4 cut(s) 209, 384, 937, 996
Hin1II CATG 4 cut(s) 123, 381, 406, 659
HinfI GANTC 5 cut(s) 199, 648, 695, 706, 731
HpaII CCGG 4 cut(s) 209, 384, 937, 996
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 2 cut(s) 46, 896
Hpy188I TCNGA 3 cut(s) 373, 647, 933
Hpy188III TCNNGA 5 cut(s) 250, 322, 502, 604, 923
Hpy8I GTNNAC 2 cut(s) 46, 896
HpyAV CCTTC 2 cut(s) 737, 835
HpyCH4III ACNGT 3 cut(s) 752, 809, 827
HpyCH4IV ACGT 2 cut(s) 366, 898
HpyCH4V TGCA 9 cut(s) 14, 114, 377, 402, 484, 560, 610, 627, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 624, 857
HpyF3I CTNAG 2 cut(s) 644, 861
HpySE526I ACGT 2 cut(s) 366, 898
Hsp92II CATG 4 cut(s) 123, 381, 406, 659
KspI CCGCGG 1 cut(s) 986
Kzo9I GATC 3 cut(s) 139, 324, 600
LmnI GCTCC 4 cut(s) 82, 211, 475, 1023
Lsp1109I GCAGC 1 cut(s) 761
LweI GCATC 4 cut(s) 364, 597, 689, 895
MaeI CTAG 4 cut(s) 74, 435, 764, 1022
MaeII ACGT 2 cut(s) 366, 898
MaeIII GTNAC 3 cut(s) 511, 757, 799
MalI GATC 3 cut(s) 141, 326, 602
MboI GATC 3 cut(s) 139, 324, 600
MfeI CAATTG 2 cut(s) 479, 527
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 526, 995
MluCI AATT 4 cut(s) 449, 479, 527, 878
MlyI GAGTC 2 cut(s) 208, 740
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 9 cut(s) 34, 153, 170, 354, 509, 670, 781, 936, 1008
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 4 cut(s) 53, 426, 711, 956
MslI CAYNNNNRTG 2 cut(s) 660, 764
MspA1I CMGCKG 1 cut(s) 985
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 4 cut(s) 209, 384, 937, 996
MspR9I CCNGG 5 cut(s) 137, 209, 336, 384, 385
MunI CAATTG 2 cut(s) 479, 527
Mva1269I GAATGC 2 cut(s) 430, 618
MvaI CCWGG 2 cut(s) 137, 336
MvnI CGCG 1 cut(s) 985
MwoI GCNNNNNNNGC 3 cut(s) 436, 624, 857
NciI CCSGG 3 cut(s) 209, 384, 385
NdeII GATC 3 cut(s) 139, 324, 600
NlaIII CATG 4 cut(s) 123, 381, 406, 659
NlaIV GGNNCC 5 cut(s) 84, 141, 213, 1008, 1019
NmeAIII GCCGAG 1 cut(s) 183
NmuCI GTSAC 3 cut(s) 511, 757, 799
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 2 cut(s) 381, 406
OliI CACNNNNGTG 1 cut(s) 764
PaeI GCATGC 1 cut(s) 406
PctI GAATGC 2 cut(s) 430, 618
PfeI GAWTC 3 cut(s) 648, 695, 706
PflFI GACNNNGTC 1 cut(s) 978
PinAI ACCGGT 2 cut(s) 936, 995
PkrI GCNGC 2 cut(s) 494, 776
PleI GAGTC 2 cut(s) 207, 739
PpsI GAGTC 2 cut(s) 207, 739
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 135, 334
PspGI CCWGG 2 cut(s) 135, 334
PspN4I GGNNCC 5 cut(s) 84, 141, 213, 1008, 1019
PspPI GGNCC 2 cut(s) 30, 206
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 978
RsaI GTAC 2 cut(s) 365, 716
RsaNI GTAC 2 cut(s) 364, 715
RseI CAYNNNNRTG 2 cut(s) 660, 764
SacII CCGCGG 1 cut(s) 986
SaqAI TTAA 4 cut(s) 53, 426, 711, 956
SatI GCNGC 2 cut(s) 493, 775
Sau3AI GATC 3 cut(s) 139, 324, 600
Sau96I GGNCC 2 cut(s) 30, 206
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 2 cut(s) 208, 740
ScrFI CCNGG 5 cut(s) 137, 209, 336, 384, 385
SduI GDGCHC 2 cut(s) 526, 995
SfaNI GCATC 4 cut(s) 364, 597, 689, 895
SfcI CTRYAG 1 cut(s) 12
Sfr303I CCGCGG 1 cut(s) 986
SgrAI CRCCGGYG 1 cut(s) 995
SgrBI CCGCGG 1 cut(s) 986
SmaI CCCGGG 1 cut(s) 385
SmiMI CAYNNNNRTG 2 cut(s) 660, 764
SmlI CTYRAG 4 cut(s) 358, 500, 710, 785
SmoI CTYRAG 4 cut(s) 358, 500, 710, 785
SphI GCATGC 1 cut(s) 406
Sse9I AATT 4 cut(s) 449, 479, 527, 878
SsiI CCGC 5 cut(s) 492, 692, 769, 983, 985
SspMI CTAG 4 cut(s) 74, 435, 764, 1022
StyD4I CCNGG 5 cut(s) 135, 207, 334, 382, 383
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 3 cut(s) 752, 809, 827
TaiI ACGT 2 cut(s) 369, 901
TaqI TCGA 6 cut(s) 189, 321, 520, 683, 941, 1013
TasI AATT 4 cut(s) 449, 479, 527, 878
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 3 cut(s) 648, 695, 706
Tru1I TTAA 4 cut(s) 53, 426, 711, 956
Tru9I TTAA 4 cut(s) 53, 426, 711, 956
TscAI CASTG 5 cut(s) 93, 280, 629, 808, 832
TseFI GTSAC 3 cut(s) 511, 757, 799
TseI GCWGC 1 cut(s) 774
Tsp45I GTSAC 3 cut(s) 511, 757, 799
TspDTI ATGAA 3 cut(s) 110, 684, 854
TspGWI ACGGA 1 cut(s) 324
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 5 cut(s) 93, 280, 629, 808, 832
Tth111I GACNNNGTC 1 cut(s) 978
Vha464I CTTAAG 1 cut(s) 710
XagI CCTNNNNNAGG 1 cut(s) 860
XapI RAATTY 1 cut(s) 878
XceI RCATGY 2 cut(s) 381, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmaI CCCGGG 1 cut(s) 383
XspI CTAG 4 cut(s) 74, 435, 764, 1022
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.