RchiOBHm_Chr5g0017871

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022776
Physical Location & Seq
Reverse (-)
12435893 .. 12436615
723 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGCAACGGCACTTACAATTTCTCAAAAGCTTTTCAATAATAGTCGCAGTCCTCTTCATTCTCTCAGTCATTTCTATCTCAGCAATATCAGAACCCATTATCAGCGATTTCGTCCAATGCCTTGCAAAACAATCTTCCTCTTCCCCAATCCCAGCAAATGTTCTCAACCAGCAAAACACCACTTTCCAAGATGCTTTGTTGGCTTACACTAGAAACAAGAGATTTTCGACACCCGCAACTCCAAAACCTTGGGCCATTGTGCCCGCTGCGCACGAATCCCACGTCCAAGCAACTGTGATTTGTGCAAAACAGCACAGGTTTCAGCTCCGAATCCAAAGCGGGGGCCACGACTTCGAGGCTCTTTCGTATGTATCGAATGTTCCTTTCGTGATCCTTGACTTGTTTAATCTCCGGTCCATTAACGTCAATGTCAAGGACGAGAGCGCTTGGGTCGAGTCCGGTGCTACTATCGGAGAGATTTATTCTAGAATTGCGGAGAAAAGTAACGTCCATGGGTTTCCGGCTGCTGCTTGCCCTGGTGTTGGTGGTGGTCACTTCAGCGGGGGTGGGTATGGCAACTTGATGAGAAAATATGGGCTCGCAGCAGATAACAATGTGGATGCCAAAATAGTGGATGTAAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

215

Amino Acids

23.29

Weight (kDa)

8.46

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 85 - 212 1.3e-18 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0017871
rosa_laevigata RLG00000032317 RLG00000032318
rosa_wichuraiana Rw5G011470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
AciI CCGC 5 cut(s) 234, 264, 339, 494, 561
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 541
AfeI AGCGCT 1 cut(s) 445
AfiI CCNNNNNNNGG 2 cut(s) 340, 542
AgsI TTSAA 1 cut(s) 36
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 2 cut(s) 30, 325
AluI AGCT 2 cut(s) 30, 325
AlwI GGATC 1 cut(s) 385
Aor51HI AGCGCT 1 cut(s) 445
AoxI GGCC 2 cut(s) 252, 343
ApeKI GCWGC 4 cut(s) 266, 524, 527, 602
ApoI RAATTY 1 cut(s) 640
ArsI GACNNNNNNTTYG 2 cut(s) 267, 299
AspLEI GCGC 2 cut(s) 271, 446
AspS9I GGNCC 3 cut(s) 252, 343, 414
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 264
BanII GRGCYC 1 cut(s) 600
BbvI GCAGC 4 cut(s) 253, 511, 514, 614
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 1 cut(s) 537
BfaI CTAG 2 cut(s) 210, 486
BfoI RGCGCY 1 cut(s) 447
BisI GCNGC 4 cut(s) 267, 525, 528, 603
BlsI GCNGC 4 cut(s) 268, 526, 529, 604
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 252, 343, 414
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 181, 610
BsaJI CCNNGG 3 cut(s) 248, 511, 535
BsaWI WCCGGW 2 cut(s) 411, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 542
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 248, 511, 535
BseGI GGATG 2 cut(s) 625, 640
BseLI CCNNNNNNNGG 2 cut(s) 340, 542
BseMII CTCAG 2 cut(s) 78, 93
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 4 cut(s) 253, 511, 514, 614
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 2 cut(s) 254, 345
BsiSI CCGG 3 cut(s) 412, 459, 521
BslI CCNNNNNNNGG 2 cut(s) 340, 542
BsnI GGCC 2 cut(s) 254, 345
Bsp1286I GDGCHC 2 cut(s) 264, 600
Bsp143I GATC 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 5 cut(s) 234, 264, 339, 494, 561
BspANI GGCC 2 cut(s) 254, 345
BspCNI CTCAG 2 cut(s) 77, 92
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 1 cut(s) 385
BssECI CCNNGG 3 cut(s) 248, 511, 535
BssMI GATC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 248, 511
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 59, 145
BstC8I GCNNGC 3 cut(s) 264, 532, 600
BstDEI CTNAG 2 cut(s) 64, 79
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 2 cut(s) 625, 640
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 2 cut(s) 271, 446
BstKTI GATC 1 cut(s) 393
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 200, 268
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 4 cut(s) 253, 511, 514, 614
BstXI CCANNNNNNTGG 2 cut(s) 249, 631
BsuRI GGCC 2 cut(s) 254, 345
BtgI CCRYGG 1 cut(s) 511
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 625, 640
Cac8I GCNNGC 3 cut(s) 264, 532, 600
CfoI GCGC 2 cut(s) 271, 446
Cfr13I GGNCC 3 cut(s) 252, 343, 414
CviAII CATG 1 cut(s) 512
CviJI RGCY 8 cut(s) 30, 203, 254, 325, 345, 359, 524, 598
CviKI_1 RGCY 8 cut(s) 30, 203, 254, 325, 345, 359, 524, 598
DdeI CTNAG 2 cut(s) 64, 79
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 59, 145
EarI CTCTTC 2 cut(s) 59, 145
Eco130I CCWWGG 2 cut(s) 248, 511
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 414
Eco47III AGCGCT 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 2 cut(s) 248, 511
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 2 cut(s) 248, 511
FaeI CATG 1 cut(s) 515
FaiI YATR 4 cut(s) 369, 513, 573, 594
FatI CATG 1 cut(s) 511
FauI CCCGC 4 cut(s) 241, 271, 332, 554
Fnu4HI GCNGC 4 cut(s) 267, 525, 528, 603
FokI GGATG 1 cut(s) 632
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 4 cut(s) 267, 525, 528, 603
FspBI CTAG 2 cut(s) 210, 486
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 2 cut(s) 270, 445
GluI GCNGC 4 cut(s) 267, 525, 528, 603
GsaI CCCAGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 2 cut(s) 254, 345
HapII CCGG 3 cut(s) 412, 459, 521
HhaI GCGC 2 cut(s) 271, 446
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 2 cut(s) 269, 444
HinP1I GCGC 2 cut(s) 269, 444
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 3 cut(s) 275, 330, 455
HpaII CCGG 3 cut(s) 412, 459, 521
Hpy188I TCNGA 3 cut(s) 91, 329, 473
Hpy188III TCNNGA 3 cut(s) 388, 486, 645
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 3 cut(s) 282, 423, 507
HpyCH4V TGCA 3 cut(s) 4, 125, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 268
HpyF3I CTNAG 2 cut(s) 64, 79
HpySE526I ACGT 3 cut(s) 282, 423, 507
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 2 cut(s) 269, 444
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 8 cut(s) 165, 182, 301, 425, 472, 522, 534, 549
Lsp1109I GCAGC 4 cut(s) 253, 511, 514, 614
LweI GCATC 2 cut(s) 181, 610
MaeI CTAG 2 cut(s) 210, 486
MaeII ACGT 3 cut(s) 282, 423, 507
MaeIII GTNAC 2 cut(s) 503, 551
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 3 cut(s) 46, 126, 132
MhlI GDGCHC 2 cut(s) 264, 600
MluCI AATT 3 cut(s) 17, 489, 640
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 3 cut(s) 62, 148, 349
MseI TTAA 2 cut(s) 405, 420
MspA1I CMGCKG 2 cut(s) 266, 561
MspI CCGG 3 cut(s) 412, 459, 521
MspR9I CCNGG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 2 cut(s) 200, 268
NcoI CCATGG 1 cut(s) 511
NdeII GATC 1 cut(s) 390
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 551
NsbI TGCGCA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 371
PfeI GAWTC 2 cut(s) 275, 330
PkrI GCNGC 4 cut(s) 268, 526, 529, 604
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 252, 343, 414
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
SaqAI TTAA 2 cut(s) 405, 420
SatI GCNGC 4 cut(s) 267, 525, 528, 603
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 3 cut(s) 252, 343, 414
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 2 cut(s) 264, 600
SetI ASST 7 cut(s) 32, 250, 285, 320, 327, 426, 510
SfaNI GCATC 2 cut(s) 181, 610
SinI GGWCC 1 cut(s) 414
Sse9I AATT 3 cut(s) 17, 489, 640
SsiI CCGC 5 cut(s) 234, 264, 339, 494, 561
SspMI CTAG 2 cut(s) 210, 486
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 2 cut(s) 248, 511
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 3 cut(s) 285, 426, 510
TaqI TCGA 4 cut(s) 227, 354, 374, 453
TasI AATT 3 cut(s) 17, 489, 640
TfiI GAWTC 2 cut(s) 275, 330
Tru1I TTAA 2 cut(s) 405, 420
Tru9I TTAA 2 cut(s) 405, 420
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 4 cut(s) 266, 524, 527, 602
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 640
XbaI TCTAGA 1 cut(s) 485
XspI CTAG 2 cut(s) 210, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.