RLG00000032317

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0022776
Physical Location & Seq
Reverse (-)
13475981 .. 13476544
564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032317

Sequence Viewer

Length: 432 bp
ATGGGTTTCCAGCTGCTGCTTGCCCTGGTGTTGGTGCTGGTGGTCACGTCAGCAGGAAAATATGGGCTCGCAGCAGATAACATTGTGGATGCCAAAATAGTGGATGTAAATGGTGCTATTCTTGGTAGGCAGTCATTGGGAGAAGACCTATTTTGGGCCATTAGAGGAGGTGCTACGGGAAGCTTTGATGGTATTTACAAGTGGCAATTTGTTGCACCGGAGCTTCCTCCAGAGATTTTCATAAGAGCAATGCCTCGAGTGAAAAAAACCACCAAGGGCACCAACACTGTGGAAGTGTCAGTCATTGGTTTCTTCTTGGGACGAAGTCATAAGCTTGTTCCATTGTTAGCTAAGAGGTTCCCTGAATTTGGTTTGCAAAGTAAAGATAGCATTGAAATGAGTTGGATAAACTCTCACTGTATTCTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

144

Amino Acids

15.59

Weight (kDa)

9.17

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0017871
rosa_laevigata RLG00000032317 RLG00000032318
rosa_wichuraiana Rw5G011470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 31, 154, 368
AgsI TTSAA 1 cut(s) 395
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 5 cut(s) 13, 183, 223, 334, 350
AluI AGCT 5 cut(s) 13, 183, 223, 334, 350
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 13, 16, 71
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 3, 83
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 26
BisI GCNGC 3 cut(s) 14, 17, 72
BlsI GCNGC 3 cut(s) 15, 18, 73
Bme1390I CCNGG 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 255
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 280, 359
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 24, 273
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 154, 368
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 24, 273
BseGI GGATG 2 cut(s) 94, 109
BseLI CCNNNNNNNGG 3 cut(s) 31, 154, 368
BseMI GCAATG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 2 cut(s) 3, 83
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 3 cut(s) 31, 154, 368
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 69, 281
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 280, 359
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 24, 273
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 289, 419
BstC8I GCNNGC 2 cut(s) 21, 69
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 94, 109
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 3, 83
BstV2I GAAGAC 1 cut(s) 150
BstXI CCANNNNNNTGG 2 cut(s) 100, 289
BsuRI GGCC 1 cut(s) 158
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 94, 109
BtsIMutI CAGTG 2 cut(s) 285, 415
Cac8I GCNNGC 2 cut(s) 21, 69
CaiI CAGNNNCTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 156
CviJI RGCY 8 cut(s) 13, 67, 158, 183, 223, 334, 350, 429
CviKI_1 RGCY 8 cut(s) 13, 67, 158, 183, 223, 334, 350, 429
DdeI CTNAG 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 273
FaiI YATR 3 cut(s) 63, 242, 330
FaqI GGGAC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 14, 17, 72
FokI GGATG 2 cut(s) 101, 116
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 14, 17, 72
GluI GCNGC 3 cut(s) 14, 17, 72
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 218
HindIII AAGCTT 2 cut(s) 181, 332
HpaII CCGG 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 289, 419
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 215, 376
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 47
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 9 cut(s) 11, 23, 23, 38, 39, 231, 243, 375, 410
Lsp1109I GCAGC 2 cut(s) 3, 83
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 43
MboII GAAGA 2 cut(s) 155, 304
MhlI GDGCHC 2 cut(s) 69, 281
MluCI AATT 2 cut(s) 206, 365
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 5 cut(s) 158, 161, 237, 264, 348
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 280, 359
NmuCI GTSAC 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 255
PflFI GACNNNGTC 1 cut(s) 324
PkrI GCNGC 3 cut(s) 15, 18, 73
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 280, 359
PspPI GGNCC 1 cut(s) 156
PspXI VCTCGAGB 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 395
SatI GCNGC 3 cut(s) 14, 17, 72
Sau96I GGNCC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 69, 281
SetI ASST 9 cut(s) 15, 50, 150, 172, 185, 225, 336, 352, 359
SfaNI GCATC 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 206, 365
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 289, 419
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 206, 365
TscAI CASTG 2 cut(s) 292, 422
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 13, 16, 71
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 229
TspRI CASTG 2 cut(s) 292, 422
Tth111I GACNNNGTC 1 cut(s) 324
XapI RAATTY 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.