Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022758

Physical Location & Seq

Genomic Coordinates Reverse (-)

18273179 .. 18274288

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACAATTATATGTGAAGCACTATATGTTAAGCATTTTTTTACTTGCCCTTACTTATCAGTATGTTTTTCACTTTTGAAATATTGGAATCTTTGCGAGAACTTGGCAATGTTCTATGTGGAGTACAACGTATCCTATGTGTACCATGCCATGTATGCCTACTTCAACAGGGATAATGTCGCACTCAGGGGTCTTGCCAAATTTTTCAAGGAACCAAGTGAGGAGGAGGGGGAGCATGCTGAGAAATTGATGGAATACCAGAATAAGCGTGGTGGAAGGGTGAAATTGAAATCAATACTGATGCCTCTCTCAGAGTTCGATCATGCTGAGAAGGGAGATGCTCTATATGCAATGGAGATTGCATTGTCTCTGAAGAAACTGACAAATGAAAAGCTACTCCACTTGCACCATGTAAGGGATCTATTATTTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

145

Amino Acids

17.06

Weight (kDa)

6.65

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	41 - 138	1.4e-16	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022758)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024071
rosa_laevigata	RLG00000025316
rosa_samantha	Rh5CG184200 Rh5DG170800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	125, 143
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	79, 166, 208, 289
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	426
ApoI	RAATTY	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
BccI	CCATC	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	2 cut(s)	291, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse3DI	GCAATG	2 cut(s)	114, 357
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	2 cut(s)	114, 357
BseMII	CTCAG	4 cut(s)	199, 231, 318, 324
BseRI	GAGGAG	2 cut(s)	236, 239
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	319, 418
BspCNI	CTCAG	4 cut(s)	198, 232, 319, 323
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	426
BsrDI	GCAATG	2 cut(s)	114, 357
BssMI	GATC	2 cut(s)	319, 418
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	5 cut(s)	185, 240, 310, 327, 435
BstKTI	GATC	2 cut(s)	322, 421
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	319, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 347
BstNSI	RCATGY	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	124, 142
CviAII	CATG	5 cut(s)	146, 151, 236, 323, 410
CviJI	RGCY	1 cut(s)	394
CviKI_1	RGCY	1 cut(s)	394
CviQI	GTAC	2 cut(s)	124, 142
DdeI	CTNAG	5 cut(s)	185, 240, 310, 327, 435
DpnI	GATC	2 cut(s)	321, 420
DpnII	GATC	2 cut(s)	319, 418
Eco57I	CTGAAG	1 cut(s)	392
FaeI	CATG	5 cut(s)	149, 154, 239, 326, 413
FatI	CATG	5 cut(s)	145, 150, 235, 322, 409
Hin1II	CATG	5 cut(s)	149, 154, 239, 326, 413
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	313, 372
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	270, 325
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	350, 362, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 347
HpyF3I	CTNAG	5 cut(s)	185, 240, 310, 327, 435
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	149, 154, 239, 326, 413
Kzo9I	GATC	2 cut(s)	319, 418
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	3 cut(s)	154, 172, 272
LweI	GCATC	2 cut(s)	291, 328
MaeII	ACGT	1 cut(s)	129
MalI	GATC	2 cut(s)	321, 420
MboI	GATC	2 cut(s)	319, 418
MboII	GAAGA	1 cut(s)	385
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	4 cut(s)	6, 200, 245, 284
MnlI	CCTC	4 cut(s)	214, 217, 220, 315
MseI	TTAA	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	155, 347
NdeII	GATC	2 cut(s)	319, 418
NlaIII	CATG	5 cut(s)	149, 154, 239, 326, 413
NlaIV	GGNNCC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	2 cut(s)	125, 143
RsaNI	GTAC	2 cut(s)	124, 142
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	319, 418
SetI	ASST	2 cut(s)	132, 396
SfaNI	GCATC	2 cut(s)	291, 328
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	4 cut(s)	6, 200, 245, 284
SspI	AATATT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	318
TasI	AATT	4 cut(s)	6, 200, 245, 284
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	402
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.