Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0022758

Physical Location & Seq

Genomic Coordinates Forward (+)

43945292 .. 43951118

Gene Structure 5827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGAGCTAATTTGCCAAATGCCGGAAGAGATGACATTGCAATTTCTTTCGAGGCTGCCTCCCAAATCTCTGATGCGATTCAAGTGCATCCATAAGTCATGGTATGCTTTGATCAATAATCCCAAGTTCATAGACAGGCACCTCCACTTGTACAACAAAGACTCCTACACTTGCTTCCTTCTCAAGCGCTCCGTGCTTGCAAGAACCCAAACTATCAAAGAGGAGATCTTATTTTCATTCCTATATGTTCCCAATGACAATGACGATGAAGACAGTCATCCTCATTTTGTTGTGGAGGACATCTTTTTTCCAACATCTATGGGTCTAAAGACCAAGGGGCACATTATTGAGCTCCCTGGGCTTTCCTCGCCAAGCATTAGGGATGTAATCCTTTTGTACGACACGGGTGAAGAGGAATCAAGTGAGGAGGAGAGGGAGCATGCTGAGAAATTGATGGAATACCAGAATAAGCGTGGTGGAAGGCTGAAATTGAAATCAATACCGATGCCTTTCTCAGAGTTCGATCATGCTGAGAAAGGAGATGCTCTATATGCAATGGAGCTTGCATTGTCTCTGGAGAAACTGACAAATGAAAAGCTGCTCCACTTGCACCATGTCGCTGAGAAGAACAAAGATGTGCAACTAACTGATTTCATTGAAAGCCTTGACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

226

Amino Acids

26.23

Weight (kDa)

5.47

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 44	9.6e-08	F-box domain
F-box-like	PF12937	5 - 50	1.1e-06	F-box-like
Ferritin	PF00210	139 - 221	3.9e-14	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0022758)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024071
rosa_laevigata	RLG00000025316
rosa_samantha	Rh5CG184200 Rh5DG170800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	155, 401
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	85, 496, 662
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	10, 355, 565, 601
AluI	AGCT	4 cut(s)	10, 355, 565, 601
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	579
Aor51HI	AGCGCT	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	58, 601
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	45, 588
BccI	CCATC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	1 cut(s)	676
BfoI	RGCGCY	1 cut(s)	193
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	2 cut(s)	59, 602
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	60, 603
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	4 cut(s)	66, 99, 498, 535
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	599
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	336, 358, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	38, 564
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	336, 358, 359
BseGI	GGATG	3 cut(s)	90, 280, 391
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	38, 564
BseMII	CTCAG	4 cut(s)	438, 525, 531, 615
BseRI	GAGGAG	3 cut(s)	239, 443, 446
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	45, 588
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	345, 357
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	114, 228, 526
Bsp1720I	GCTNAGC	1 cut(s)	6
BspCNI	CTCAG	4 cut(s)	439, 526, 530, 616
BspLI	GGNNCC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	38, 564
BsrGI	TGTACA	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	336, 358, 359
BssMI	GATC	3 cut(s)	114, 228, 526
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	24, 408
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	201, 444, 567
BstDEI	CTNAG	5 cut(s)	6, 447, 517, 534, 624
BstF5I	GGATG	3 cut(s)	90, 280, 391
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	117, 231, 529
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	3 cut(s)	114, 228, 526
BstMWI	GCNNNNNNNGC	6 cut(s)	196, 361, 370, 554, 610, 672
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	45, 588
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	90, 280, 391
Cac8I	GCNNGC	3 cut(s)	201, 444, 567
CfoI	GCGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	154, 400
CviAII	CATG	4 cut(s)	102, 443, 530, 617
CviJI	RGCY	9 cut(s)	5, 10, 58, 355, 364, 487, 565, 601, 666
CviKI_1	RGCY	9 cut(s)	5, 10, 58, 355, 364, 487, 565, 601, 666
CviQI	GTAC	2 cut(s)	154, 400
DdeI	CTNAG	5 cut(s)	6, 447, 517, 534, 624
DpnI	GATC	3 cut(s)	116, 230, 528
DpnII	GATC	3 cut(s)	114, 228, 526
Eam1104I	CTCTTC	2 cut(s)	24, 408
EarI	CTCTTC	2 cut(s)	24, 408
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	4 cut(s)	105, 446, 533, 620
FatI	CATG	4 cut(s)	101, 442, 529, 616
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	59, 602
FokI	GGATG	3 cut(s)	77, 267, 398
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	59, 602
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	59, 602
GsuI	CTGGAG	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	193
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	105, 446, 533, 620
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	81, 164, 419
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	75, 520
Hpy188III	TCNNGA	1 cut(s)	578
HpyAV	CCTTC	2 cut(s)	191, 477
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	7 cut(s)	43, 90, 203, 557, 569, 613, 643
HpyF10VI	GCNNNNNNNGC	6 cut(s)	196, 361, 370, 554, 610, 672
HpyF3I	CTNAG	5 cut(s)	6, 447, 517, 534, 624
Hsp92II	CATG	4 cut(s)	105, 446, 533, 620
HspAI	GCGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	114, 228, 526
LmnI	GCTCC	5 cut(s)	197, 360, 439, 562, 609
LpnPI	CCDG	6 cut(s)	39, 124, 345, 372, 479, 563
Lsp1109I	GCAGC	2 cut(s)	45, 588
LweI	GCATC	4 cut(s)	66, 99, 498, 535
MaeI	CTAG	1 cut(s)	676
MalI	GATC	3 cut(s)	116, 230, 528
MboI	GATC	3 cut(s)	114, 228, 526
MboII	GAAGA	4 cut(s)	41, 284, 425, 640
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	345, 357
MluCI	AATT	4 cut(s)	12, 44, 452, 491
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	338
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	6 cut(s)	196, 361, 370, 554, 610, 672
NdeII	GATC	3 cut(s)	114, 228, 526
NlaIII	CATG	4 cut(s)	105, 446, 533, 620
NlaIV	GGNNCC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	446
PasI	CCCWGGG	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	81, 419
PkrI	GCNGC	2 cut(s)	60, 603
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	155, 401
RsaNI	GTAC	2 cut(s)	154, 400
SacI	GAGCTC	1 cut(s)	357
SatI	GCNGC	2 cut(s)	59, 602
Sau3AI	GATC	3 cut(s)	114, 228, 526
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	345, 357
SetI	ASST	5 cut(s)	12, 147, 357, 567, 603
SfaNI	GCATC	4 cut(s)	66, 99, 498, 535
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	4 cut(s)	12, 44, 452, 491
SspMI	CTAG	1 cut(s)	676
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	53, 525
TasI	AATT	4 cut(s)	12, 44, 452, 491
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	81, 419
TseI	GCWGC	2 cut(s)	58, 601
TspDTI	ATGAA	5 cut(s)	121, 228, 285, 609, 646
TspGWI	ACGGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XspI	CTAG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.