Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0022758

Physical Location & Seq

Genomic Coordinates Reverse (-)

18321297 .. 18323951

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAGTGAAGCGCGGGCTCTACCGGAACCGAGCCGCCGGATCTCATTCCCTACTGAGTGTGGAGTACAACGTATCCTATGTGTACCATGCCATGTATGCCTACTTCAACAGGGATAATGTCGCACTCAGGGGTCTTGCCAAATTTTTCAAGGAACCAAGTGAGGAGGAGGGGGAGCATGCTGAGAAATTGATGGAATACCAGAATAAGCGTGGTGGAAGGGTGAAATTGAAATCAATACTGATGCCTCTCTCAGAGTTCGATCATGCTGAGAAGGGAGATGCTCTATATGCAATGGAGATTGCATTGTCTCTGAAGAAACTGACAAATGAAAAGCTACTCCACTTGCACCATGTAAGGGATCTATTATTTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

126

Amino Acids

14.53

Weight (kDa)

9.07

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	18 - 119	7.5e-18	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022758)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024071
rosa_laevigata	RLG00000025316
rosa_samantha	Rh5CG184200 Rh5DG170800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	15, 36
AclWI	GGATC	2 cut(s)	49, 369
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	109, 151, 232
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	49, 369
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BccI	CCATC	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	29, 156
BmsI	GCATC	2 cut(s)	234, 271
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	5 cut(s)	47, 142, 174, 261, 267
BseRI	GAGGAG	2 cut(s)	179, 182
Bsh1236I	CGCG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	25, 39
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	41, 262, 361
BspACI	CCGC	2 cut(s)	15, 36
BspCNI	CTCAG	5 cut(s)	48, 141, 175, 262, 266
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	29, 156
BspPI	GGATC	2 cut(s)	49, 369
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	3 cut(s)	41, 262, 361
BstC8I	GCNNGC	2 cut(s)	17, 180
BstDEI	CTNAG	6 cut(s)	56, 128, 183, 253, 270, 378
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	44, 265, 364
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	3 cut(s)	41, 262, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 290
BstNSI	RCATGY	1 cut(s)	182
BstUI	CGCG	1 cut(s)	15
BstX2I	RGATCY	2 cut(s)	41, 361
BstYI	RGATCY	2 cut(s)	41, 361
BsuI	GTATCC	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	17, 180
CfoI	GCGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	67, 85
CviAII	CATG	5 cut(s)	89, 94, 179, 266, 353
CviJI	RGCY	3 cut(s)	19, 35, 337
CviKI_1	RGCY	3 cut(s)	19, 35, 337
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	6 cut(s)	56, 128, 183, 253, 270, 378
DpnI	GATC	3 cut(s)	43, 264, 363
DpnII	GATC	3 cut(s)	41, 262, 361
Eco24I	GRGCYC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	5 cut(s)	92, 97, 182, 269, 356
FaiI	YATR	9 cut(s)	81, 90, 95, 99, 180, 267, 289, 291, 354
FatI	CATG	5 cut(s)	88, 93, 178, 265, 352
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	36
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	2 cut(s)	25, 39
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	92, 97, 182, 269, 356
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	25, 39
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	256, 315
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	213, 268
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	293, 305, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 290
HpyF3I	CTNAG	6 cut(s)	56, 128, 183, 253, 270, 378
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	92, 97, 182, 269, 356
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	41, 262, 361
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	38, 52, 97, 115, 215
LweI	GCATC	2 cut(s)	234, 271
MaeII	ACGT	1 cut(s)	72
MalI	GATC	3 cut(s)	43, 264, 363
MboI	GATC	3 cut(s)	41, 262, 361
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	2 cut(s)	41, 361
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	143, 188, 227
MnlI	CCTC	4 cut(s)	157, 160, 163, 258
MspI	CCGG	2 cut(s)	25, 39
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	98, 290
NdeII	GATC	3 cut(s)	41, 262, 361
NlaIII	CATG	5 cut(s)	92, 97, 182, 269, 356
NlaIV	GGNNCC	2 cut(s)	29, 156
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	29, 156
PsuI	RGATCY	2 cut(s)	41, 361
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	41, 262, 361
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	2 cut(s)	75, 339
SfaNI	GCATC	2 cut(s)	234, 271
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	143, 188, 227
SsiI	CCGC	2 cut(s)	15, 36
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	143, 188, 227
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.