Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0022758

Physical Location & Seq

Genomic Coordinates Reverse (-)

18440374 .. 18447742

Gene Structure 7369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG184200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAGTGAAGCGCGGGCTCTACCGGAACCGAGCCGCCGGATCTCATTCCCTACTGAGTGTGGAGTACAACGTATCCTATGTGTACCATGCCATGTATGCCTACTTCAACAGGGATAATGTCGCACTCAGGGGTCTTGCCAAATTTTTCAAGGAACCAAGTGAGGAGGAGGGGGAGCATGCTGAGAAATTGATGGAATACCAGAATAAGCGTGGTGGAAGGGTGAAATTGAAATCAATACTGATGCCTCTCTCAGAGTTCGATCATGCTGAGAAGGGAGATGCTCTATATGCAATGGAGATTGCATTGTCTCTGAAGAAACTGACAAATGAAAAGCTACTCCACTTGCACCATGCAGCCACAGAACCTAGAAAACTCTATTGCCAAGCCTGTCGCAAGTTCGAAGTGTTGGATCCAAAGGGTTATGGCTTGAGGTGGAAGACCCATACTGATTTGAATCCAAATTGGAGGATATTGGAAGAGAAATGGGTCGAGAGATCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

168

Amino Acids

19.69

Weight (kDa)

9.21

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	18 - 122	2.3e-18	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022758)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024071
rosa_laevigata	RLG00000025316
rosa_samantha	Rh5CG184200 Rh5DG170800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	15, 36
AclWI	GGATC	3 cut(s)	49, 407, 420
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	68, 86
AgsI	TTSAA	4 cut(s)	109, 151, 232, 457
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	3 cut(s)	49, 407, 420
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	36, 357
BlsI	GCNGC	2 cut(s)	37, 358
BmiI	GGNNCC	3 cut(s)	29, 156, 414
BmsI	GCATC	2 cut(s)	234, 271
BpiI	GAAGAC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	456
BsaWI	WCCGGW	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	456
BseJI	GATNNNNATC	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	5 cut(s)	47, 142, 174, 261, 267
BseRI	GAGGAG	2 cut(s)	179, 182
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	25, 39
BsmAI	GTCTC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	41, 262, 412, 497
BspACI	CCGC	2 cut(s)	15, 36
BspCNI	CTCAG	5 cut(s)	48, 141, 175, 262, 266
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	29, 156, 414
BspPI	GGATC	3 cut(s)	49, 407, 420
BspT104I	TTCGAA	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	4 cut(s)	41, 262, 412, 497
Bst6I	CTCTTC	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	17, 180
BstDEI	CTNAG	5 cut(s)	56, 128, 183, 253, 270
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	4 cut(s)	44, 265, 415, 500
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	41, 262, 412, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 290
BstNSI	RCATGY	1 cut(s)	182
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	41, 412
BstYI	RGATCY	2 cut(s)	41, 412
BsuI	GTATCC	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	17, 180
CfoI	GCGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	67, 85
CviAII	CATG	5 cut(s)	89, 94, 179, 266, 353
CviJI	RGCY	6 cut(s)	19, 35, 337, 359, 389, 429
CviKI_1	RGCY	6 cut(s)	19, 35, 337, 359, 389, 429
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	5 cut(s)	56, 128, 183, 253, 270
DpnI	GATC	4 cut(s)	43, 264, 414, 499
DpnII	GATC	4 cut(s)	41, 262, 412, 497
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	5 cut(s)	92, 97, 182, 269, 356
FatI	CATG	5 cut(s)	88, 93, 178, 265, 352
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	36, 357
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	36, 357
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	36, 357
HapII	CCGG	2 cut(s)	25, 39
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	92, 97, 182, 269, 356
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	25, 39
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	256, 315
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	213, 268
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	293, 305, 349, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 290
HpyF3I	CTNAG	5 cut(s)	56, 128, 183, 253, 270
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	92, 97, 182, 269, 356
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	41, 262, 412, 497
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	38, 52, 97, 115, 215, 403
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	2 cut(s)	234, 271
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	72
MalI	GATC	4 cut(s)	43, 264, 414, 499
MboI	GATC	4 cut(s)	41, 262, 412, 497
MboII	GAAGA	3 cut(s)	328, 451, 491
MflI	RGATCY	2 cut(s)	41, 412
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	4 cut(s)	143, 188, 227, 463
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	157, 160, 163, 258, 426, 462
MseI	TTAA	1 cut(s)	505
MspI	CCGG	2 cut(s)	25, 39
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	98, 290
NdeII	GATC	4 cut(s)	41, 262, 412, 497
NlaIII	CATG	5 cut(s)	92, 97, 182, 269, 356
NlaIV	GGNNCC	3 cut(s)	29, 156, 414
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	402
PaeI	GCATGC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	37, 358
PspN4I	GGNNCC	3 cut(s)	29, 156, 414
PsuI	RGATCY	2 cut(s)	41, 412
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	2 cut(s)	36, 357
Sau3AI	GATC	4 cut(s)	41, 262, 412, 497
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	4 cut(s)	75, 339, 370, 437
SfaNI	GCATC	2 cut(s)	234, 271
SfuI	TTCGAA	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	4 cut(s)	143, 188, 227, 463
SsiI	CCGC	2 cut(s)	15, 36
SspMI	CTAG	1 cut(s)	369
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	261, 402, 492
TasI	AATT	4 cut(s)	143, 188, 227, 463
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.