Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022754

Physical Location & Seq

Genomic Coordinates Reverse (-)

36301229 .. 36301411

Gene Structure 183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATAAATGATGCATTTGATATTGTCACATATGCTCCTGCATTTTATAGATGGGTGGTGATGGAGATGGGTCTCAACCAACTCTTCAATGTCCTTCGTTCTACTATGCCATGGAACTCACTCATGGATAGAATGATGATGGAGCTCCATTTGCAAGGAAAGACTACTGATCGAGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

60

Amino Acids

7.13

Weight (kDa)

5.99

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	16 - 57	7.6e-09	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022754)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0041451
rosa_multiflora	Rmu_sc0002584.1_g000027
rosa_roxburghii	Rroxscaffold_1G00039120
rosa_wichuraiana	Rw5G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BccI	CCATC	4 cut(s)	45, 55, 61, 133
BcoDI	GTCTC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
BseDI	CCNNGG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	110
CviAII	CATG	2 cut(s)	111, 124
CviJI	RGCY	1 cut(s)	145
CviKI_1	RGCY	1 cut(s)	145
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	114, 127
FaiI	YATR	6 cut(s)	31, 33, 48, 107, 112, 125
FatI	CATG	2 cut(s)	110, 123
FauNDI	CATATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	114, 127
HphI	GGTGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	14, 41, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	114, 127
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	3 cut(s)	40, 142, 150
LpnPI	CCDG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	147
MnlI	CCTC	1 cut(s)	167
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	114, 127
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	1 cut(s)	147
SgeI	CNNG	4 cut(s)	50, 123, 136, 167
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	110
TaqI	TCGA	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	181
Tru9I	TTAA	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.