Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002584.1

Orthogroup ID

OG0022754

Physical Location & Seq

Genomic Coordinates Forward (+)

69187 .. 69898

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002584.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgataaatgatgcatttgatattgccacatatgctcctgcatcagatagatgggtggtgatggagatgggtctcacccaactcttcaatgagcttcgttctactatgacttggaactcactcatggatagattcgatagaatgatgaaggagctccatttgcatggaaagacttctgaggccattaaagagtgcctcaaaagaactccaatgcatccacaagtagctgccgctattaagtcagctcatgcttcgggatatggagatggaagactgagaatctttccttaccatgatccagtctcatcttctcatggttgcaatctttgcccttcgggtcaggtgattgaccaatttttagcttctgcttctgaaaatgggaggaagagatgcatctaccttggagatgggagaaactacgatttttgcccgccaactctgaaactagtagagggagaccatgtaataccaaggaaggactgtcctctatgggattgcacttgcagcaactactcactgataaagaatcatgttgttagaaacattgtgtatatctcactgataaagaatggacactacttggatttcttaaaaaaacaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

201

Amino Acids

22.85

Weight (kDa)

8.39

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022754)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0041451
rosa_multiflora	Rmu_sc0002584.1_g000027
rosa_roxburghii	Rroxscaffold_1G00039120
rosa_wichuraiana	Rw5G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 431
AclWI	GGATC	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	445
AluBI	AGCT	5 cut(s)	94, 154, 227, 245, 362
AluI	AGCT	5 cut(s)	94, 154, 227, 245, 362
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	3 cut(s)	77, 307, 450
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	227, 504
Asp700I	GAANNNNTTC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	67, 70, 355
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	214, 516
BccI	CCATC	5 cut(s)	45, 55, 61, 260, 401
BcoDI	GTCTC	3 cut(s)	77, 307, 450
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	228, 231, 505
BlsI	GCNGC	3 cut(s)	229, 232, 506
BmsI	GCATC	4 cut(s)	50, 223, 380, 402
BpiI	GAAGAC	1 cut(s)	277
BsaI	GGTCTC	2 cut(s)	77, 450
BsaJI	CCNNGG	2 cut(s)	400, 470
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 447, 477
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	400, 470
BseGI	GGATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	168, 266
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	214, 516
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	156
BsmAI	GTCTC	3 cut(s)	77, 307, 450
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	2 cut(s)	77, 450
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	2 cut(s)	231, 431
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	2 cut(s)	169, 267
BspPI	GGATC	1 cut(s)	290
BspTNI	GGTCTC	2 cut(s)	77, 450
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	400, 470
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	400, 470
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	2 cut(s)	89, 380
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	177, 275
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	3 cut(s)	77, 307, 450
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 160, 327, 504
BstV1I	GCAGC	2 cut(s)	214, 516
BstV2I	GAAGAC	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	515, 557
Cac8I	GCNNGC	1 cut(s)	431
CviAII	CATG	7 cut(s)	124, 164, 248, 293, 314, 461, 530
CviJI	RGCY	6 cut(s)	94, 154, 182, 227, 245, 362
CviKI_1	RGCY	6 cut(s)	94, 154, 182, 227, 245, 362
DdeI	CTNAG	2 cut(s)	177, 275
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	89, 380
EarI	CTCTTC	2 cut(s)	89, 380
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	400, 470
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	2 cut(s)	77, 450
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	400, 470
EcoT22I	ATGCAT	3 cut(s)	16, 216, 395
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	400, 470
FaeI	CATG	7 cut(s)	127, 167, 251, 296, 317, 464, 533
FatI	CATG	7 cut(s)	123, 163, 247, 292, 313, 460, 529
FauI	CCCGC	1 cut(s)	438
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	228, 231, 505
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	228, 231, 505
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	3 cut(s)	228, 231, 505
HaeIII	GGCC	1 cut(s)	182
Hin1II	CATG	7 cut(s)	127, 167, 251, 296, 317, 464, 533
HinfI	GANTC	3 cut(s)	132, 279, 526
HphI	GGTGA	3 cut(s)	67, 70, 355
Hpy188I	TCNGA	4 cut(s)	46, 178, 373, 441
Hpy188III	TCNNGA	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	142, 342, 469
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	8 cut(s)	14, 41, 163, 214, 321, 393, 498, 504
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 160, 327, 504
HpyF3I	CTNAG	2 cut(s)	177, 275
Hsp92II	CATG	7 cut(s)	127, 167, 251, 296, 317, 464, 533
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	40, 151, 159
LpnPI	CCDG	3 cut(s)	51, 312, 326
Lsp1109I	GCAGC	2 cut(s)	214, 516
LweI	GCATC	4 cut(s)	50, 223, 380, 402
MaeI	CTAG	1 cut(s)	446
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	4 cut(s)	76, 282, 300, 397
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	353, 601
MnlI	CCTC	5 cut(s)	172, 206, 375, 445, 495
Mph1103I	ATGCAT	3 cut(s)	16, 216, 395
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	4 cut(s)	186, 237, 590, 604
MslI	CAYNNNNRTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	32, 160, 327, 504
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	7 cut(s)	127, 167, 251, 296, 317, 464, 533
NsiI	ATGCAT	3 cut(s)	16, 216, 395
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	132, 279, 526
PkrI	GCNGC	3 cut(s)	229, 232, 506
Psp124BI	GAGCTC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	4 cut(s)	186, 237, 590, 604
SatI	GCNGC	3 cut(s)	228, 231, 505
Sau3AI	GATC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	96, 156, 229, 247, 345, 364, 402
SfaNI	GCATC	4 cut(s)	50, 223, 380, 402
SmiMI	CAYNNNNRTG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	445
Sse9I	AATT	2 cut(s)	353, 601
SsiI	CCGC	2 cut(s)	231, 431
SspMI	CTAG	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	400, 470
TaaI	ACNGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	353, 601
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	132, 279, 526
Tru1I	TTAA	4 cut(s)	186, 237, 590, 604
Tru9I	TTAA	4 cut(s)	186, 237, 590, 604
TscAI	CASTG	2 cut(s)	522, 564
TseI	GCWGC	2 cut(s)	227, 504
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	522, 564
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	446
Zsp2I	ATGCAT	3 cut(s)	16, 216, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.