Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0022754

Physical Location & Seq

Genomic Coordinates Reverse (-)

37836021 .. 37841368

Gene Structure 5348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACGGGAAAAGTGGTGGTTTTTGACTTCGACCGTACCCTAATTGATGACAGTGATAATAGATGGGTGGTGATGGAGATGGGTCTCACCCAACTCTTCAATGAGCTTCGTTCTACTATGACATGGAACTCACTCATGGATAGATTCGATAGAATGATGATGGAGCTCCATTTGCATGGAAAGACTTCTGAGGACATTAAAGAGTGCCTCAAAAGAACTCCAATGCATCCACAAGTAGCTGCCGCTATTAAGTCAGCTCATGCTTCGGGATGTGACTTAAAGATAATTAGTGATGCAAATCAGTTTTTCATTGAGTCAATCTTGGAATGTCCTGTGATTGACCAATTTTTAGCTTCTGCTTCTGAAAATGGGAGGAAGAGATGCATCTACCTTGGAGATGGGAGAAACTACGATTTTTGCCCGCCAACTCTGAAACTAGTAGAGGGAGACCATGTAATACCAAGGAAGGACTGTCCTCTATGGGATTGCACTTGCAGCAACTACTCACTGATAAAGAATCATGTTGTTAGAAACATTGTGTATATCTCACTGATAAAGAATGGACACTACTTGGATTTCTTAAAAAAAAAAATTAAAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

201

Amino Acids

23.19

Weight (kDa)

8.09

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	5 - 109	5.4e-33	Putative Phosphatase
HAD	PF12710	6 - 126	1.5e-08	haloacid dehalogenase-like hydrolase
Put_Phosphatase	PF06888	112 - 176	1.6e-10	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022754)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0041451
rosa_multiflora	Rmu_sc0002584.1_g000027
rosa_roxburghii	Rroxscaffold_1G00039120
rosa_wichuraiana	Rw5G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	243, 422
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	100
AhlI	ACTAGT	1 cut(s)	436
AluBI	AGCT	5 cut(s)	106, 166, 239, 257, 353
AluI	AGCT	5 cut(s)	106, 166, 239, 257, 353
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	89, 441
ApeKI	GCWGC	2 cut(s)	239, 495
Asp700I	GAANNNNTTC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	79, 82
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	226, 507
BccI	CCATC	5 cut(s)	57, 67, 73, 154, 392
BcoDI	GTCTC	2 cut(s)	89, 441
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	3 cut(s)	240, 243, 496
BlsI	GCNGC	3 cut(s)	241, 244, 497
BmsI	GCATC	4 cut(s)	235, 283, 371, 393
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	2 cut(s)	89, 441
BsaJI	CCNNGG	2 cut(s)	391, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bse8I	GATNNNNATC	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	391, 461
BseGI	GGATG	2 cut(s)	226, 275
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	226, 507
Bsh1285I	CGRYCG	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	89, 441
Bso31I	GGTCTC	2 cut(s)	89, 441
Bsp1286I	GDGCHC	1 cut(s)	168
BspACI	CCGC	2 cut(s)	243, 422
BspCNI	CTCAG	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	89, 441
BssECI	CCNNGG	2 cut(s)	391, 461
BssT1I	CCWWGG	2 cut(s)	391, 461
Bst4CI	ACNGT	3 cut(s)	35, 53, 473
Bst6I	CTCTTC	2 cut(s)	101, 371
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	226, 275
BstMAI	GTCTC	2 cut(s)	89, 441
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 495
BstV1I	GCAGC	2 cut(s)	226, 507
BstXI	CCANNNNNNTGG	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	226, 275
BtsIMutI	CAGTG	3 cut(s)	58, 506, 548
Cac8I	GCNNGC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	6 cut(s)	123, 136, 176, 260, 452, 521
CviJI	RGCY	5 cut(s)	106, 166, 239, 257, 353
CviKI_1	RGCY	5 cut(s)	106, 166, 239, 257, 353
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	101, 371
EarI	CTCTTC	2 cut(s)	101, 371
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	391, 461
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	2 cut(s)	89, 441
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	391, 461
EcoT22I	ATGCAT	2 cut(s)	228, 386
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	2 cut(s)	391, 461
FaeI	CATG	6 cut(s)	126, 139, 179, 263, 455, 524
FaiI	YATR	9 cut(s)	119, 124, 137, 177, 261, 453, 481, 522, 543
FatI	CATG	6 cut(s)	122, 135, 175, 259, 451, 520
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	240, 243, 496
FokI	GGATG	2 cut(s)	213, 282
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	240, 243, 496
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	3 cut(s)	240, 243, 496
Hin1II	CATG	6 cut(s)	126, 139, 179, 263, 455, 524
HinfI	GANTC	3 cut(s)	144, 314, 517
HphI	GGTGA	2 cut(s)	79, 82
Hpy188I	TCNGA	3 cut(s)	190, 364, 432
Hpy188III	TCNNGA	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	35, 53, 473
HpyCH4V	TGCA	6 cut(s)	175, 226, 296, 384, 489, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 495
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	126, 139, 179, 263, 455, 524
LmnI	GCTCC	2 cut(s)	163, 171
LpnPI	CCDG	1 cut(s)	345
Lsp1109I	GCAGC	2 cut(s)	226, 507
LweI	GCATC	4 cut(s)	235, 283, 371, 393
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	272
MboII	GAAGA	2 cut(s)	88, 388
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	4 cut(s)	42, 285, 344, 591
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	5 cut(s)	184, 218, 366, 436, 486
Mph1103I	ATGCAT	2 cut(s)	228, 386
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	5 cut(s)	198, 249, 278, 581, 594
MslI	CAYNNNNRTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	172, 495
NlaIII	CATG	6 cut(s)	126, 139, 179, 263, 455, 524
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	2 cut(s)	228, 386
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	144, 517
PkrI	GCNGC	3 cut(s)	241, 244, 497
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	198, 249, 278, 581, 594
SatI	GCNGC	3 cut(s)	240, 243, 496
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	108, 168, 241, 259, 355, 393
SfaNI	GCATC	4 cut(s)	235, 283, 371, 393
SmiMI	CAYNNNNRTG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	4 cut(s)	42, 285, 344, 591
SsiI	CCGC	2 cut(s)	243, 422
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	391, 461
TaaI	ACNGT	3 cut(s)	35, 53, 473
TaqI	TCGA	2 cut(s)	30, 147
TasI	AATT	4 cut(s)	42, 285, 344, 591
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	144, 517
Tru1I	TTAA	5 cut(s)	198, 249, 278, 581, 594
Tru9I	TTAA	5 cut(s)	198, 249, 278, 581, 594
TscAI	CASTG	3 cut(s)	58, 513, 555
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	239, 495
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	298
TspRI	CASTG	3 cut(s)	58, 513, 555
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	1 cut(s)	437
Zsp2I	ATGCAT	2 cut(s)	228, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.