RchiOBHm_Chr5g0045241

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017719
Physical Location & Seq
Forward (+)
41196590 .. 41197252
663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGACCGAAACTTTTGGGAGGAGGAGACATGCCACTTTGGTCAAGAAAGCCCAAGAATTATCTATTCTTTGTGCCGCAGAGGTCGCAGTCATCGCGTTCACTAGCGATGGAAAGCTTCATGAGTATTCTAGCACCAGTAGTGTGGAACACACTCTTTCAAGATACAAGAACAATAAGGGCGGCCAAGTCCTCCCAACCAAGGTGGAATCTGATCCGCCAAAGGAGTGCCGCCGCGAAACTGCTGCGGAAGAAAAGGACCCAAAATCAAGTGACAAAGTTCTTCATGCACTCAAGGGACAACATGCAGCGCTGAAATTAGACAAGCAGCGGAGGATGGGAAAGGCGTTGGATGGCTTAAGTAGGGAAGAGCTGTATGCCCTAGAGCAACAACAAAAGTGGGCGTTAGTATCTGTCATGAAAAAGAAGGAAGAACTACTTGTGCGGTTGTTGCACAGGTCTAAGGCGCGTGAACAGCAAGCCATTCAGGAGAAGGAGAATTTGAGAAGGGGTTATGAAGTGAGGACGACGGAAAAGCCATATCTCCAACTGTTCCCTGAGAACAGTACGAGTTTCTGCACAAGCTCGAAAGCTGTTTCACTTTCGAATTGTCCAACAGAGAATATGGACATTTCTTTGCACCTTGGGCTGTCATATAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

220

Amino Acids

24.9

Weight (kDa)

9.27

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 8 - 42 5.5e-13 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 86 - 169 2.7e-07 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017719)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29460
rosa_chinensis RchiOBHm_Chr5g0045241
rosa_laevigata RLG00000034347
rosa_multiflora Rmu_sc0001773.1_g000020 Rmu_sc0007992.1_g000003
rosa_roxburghii Rroxscaffold_1G00035810
rosa_rugosa Rorug05G0222100
rosa_samantha Rh5BG311700 Rh5CG337800 Rh5DG321800
rosa_wichuraiana Rw5G028140 Rw5G028450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 95, 234, 466
AciI CCGC 8 cut(s) 75, 180, 215, 229, 232, 245, 328, 442
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 496
AfaI GTAC 1 cut(s) 565
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 199
AflII CTTAAG 1 cut(s) 355
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 4 cut(s) 115, 370, 582, 590
AluI AGCT 4 cut(s) 115, 370, 582, 590
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 242, 305, 325
ApoI RAATTY 1 cut(s) 496
AspLEI GCGC 2 cut(s) 310, 466
AspS9I GGNCC 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 229, 317, 337
BccI CCATC 3 cut(s) 101, 328, 344
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 3 cut(s) 102, 129, 380
BfoI RGCGCY 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 7 cut(s) 75, 181, 229, 232, 243, 306, 326
BlsI GCNGC 7 cut(s) 76, 182, 230, 233, 244, 307, 327
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 198, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 198, 640
BseGI GGATG 2 cut(s) 339, 355
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 34, 37
BseXI GCAGC 3 cut(s) 229, 317, 337
BsgI GTGCAG 1 cut(s) 559
Bsh1236I CGCG 3 cut(s) 95, 234, 466
BshFI GGCC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 602
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 8 cut(s) 75, 180, 215, 229, 232, 245, 328, 442
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 547
BspFNI CGCG 3 cut(s) 95, 234, 466
BspHI TCATGA 2 cut(s) 118, 414
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 602
BspTI CTTAAG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 198, 640
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 198, 640
Bst4CI ACNGT 2 cut(s) 549, 563
Bst6I CTCTTC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 355
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 459, 555
BstF5I GGATG 2 cut(s) 339, 355
BstFNI CGCG 3 cut(s) 95, 234, 466
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 310, 466
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 5 cut(s) 83, 92, 448, 472, 643
BstNSI RCATGY 2 cut(s) 32, 305
BstUI CGCG 3 cut(s) 95, 234, 466
BstV1I GCAGC 3 cut(s) 229, 317, 337
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 183
BtgZI GCGATG 2 cut(s) 76, 120
BtsCI GGATG 2 cut(s) 339, 355
Cac8I GCNNGC 1 cut(s) 477
CciI TCATGA 2 cut(s) 118, 414
CfoI GCGC 2 cut(s) 310, 466
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 564
CspCI CAANNNNNGTGG 4 cut(s) 183, 218, 377, 412
CviAII CATG 5 cut(s) 29, 119, 284, 302, 415
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 2 cut(s) 459, 555
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 198, 640
Eco47I GGWCC 1 cut(s) 256
Eco47III AGCGCT 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 198, 640
ErhI CCWWGG 2 cut(s) 198, 640
FaeI CATG 5 cut(s) 32, 122, 287, 305, 418
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 309
FatI CATG 5 cut(s) 28, 118, 283, 301, 414
Fnu4HI GCNGC 7 cut(s) 75, 181, 229, 232, 243, 306, 326
FokI GGATG 2 cut(s) 346, 362
Fsp4HI GCNGC 7 cut(s) 75, 181, 229, 232, 243, 306, 326
FspBI CTAG 3 cut(s) 102, 129, 380
GlaI GCGC 2 cut(s) 309, 465
GluI GCNGC 7 cut(s) 75, 181, 229, 232, 243, 306, 326
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 1 cut(s) 183
HhaI GCGC 2 cut(s) 310, 466
Hin1II CATG 5 cut(s) 32, 122, 287, 305, 418
Hin6I GCGC 2 cut(s) 308, 464
HinP1I GCGC 2 cut(s) 308, 464
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 99, 470
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 5 cut(s) 43, 119, 159, 415, 485
Hpy8I GTNNAC 2 cut(s) 99, 470
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 3 cut(s) 418, 484, 498
HpyCH4III ACNGT 2 cut(s) 549, 563
HpyCH4V TGCA 5 cut(s) 287, 305, 451, 576, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 92, 448, 472, 643
HpyF3I CTNAG 2 cut(s) 459, 555
Hsp92II CATG 5 cut(s) 32, 122, 287, 305, 418
HspAI GCGC 2 cut(s) 308, 464
Kzo9I GATC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 360
LpnPI CCDG 4 cut(s) 148, 439, 470, 567
Lsp1109I GCAGC 3 cut(s) 229, 317, 337
MaeI CTAG 3 cut(s) 102, 129, 380
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 4 cut(s) 260, 272, 377, 440
MluCI AATT 4 cut(s) 56, 314, 496, 604
MmeI TCCRAC 3 cut(s) 327, 568, 635
MnlI CCTC 6 cut(s) 12, 15, 73, 200, 324, 513
MseI TTAA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 328
MspCI CTTAAG 1 cut(s) 355
MvnI CGCG 3 cut(s) 95, 234, 466
MwoI GCNNNNNNNGC 5 cut(s) 83, 92, 448, 472, 643
NdeII GATC 1 cut(s) 211
NlaIII CATG 5 cut(s) 32, 122, 287, 305, 418
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 2 cut(s) 32, 305
NspV TTCGAA 1 cut(s) 602
PagI TCATGA 2 cut(s) 118, 414
PciSI GCTCTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 7 cut(s) 76, 182, 230, 233, 244, 307, 327
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 7 cut(s) 75, 181, 229, 232, 243, 306, 326
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 256
SetI ASST 8 cut(s) 84, 117, 204, 372, 458, 584, 592, 642
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 290, 355
SmoI CTYRAG 2 cut(s) 290, 355
Sse9I AATT 4 cut(s) 56, 314, 496, 604
SsiI CCGC 8 cut(s) 75, 180, 215, 229, 232, 245, 328, 442
SspMI CTAG 3 cut(s) 102, 129, 380
StyI CCWWGG 2 cut(s) 198, 640
TaaI ACNGT 2 cut(s) 549, 563
TaqI TCGA 2 cut(s) 584, 602
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 56, 314, 496, 604
TauI GCSGC 4 cut(s) 77, 183, 231, 234
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 242, 305, 325
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 107, 272, 431, 528
TspGWI ACGGA 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 496
XceI RCATGY 2 cut(s) 32, 305
XspI CTAG 3 cut(s) 102, 129, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.