RchiOBHm_Chr5g0045931

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021441
Physical Location & Seq
Reverse (-)
41979633 .. 41979959
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGTCATCTCTCCAACCAATATTCTCTTACAAATCCAGTTCCAACTTCAGTGAGGATCAATGGGTGATTCAAATCCAAAAAACCGTAGAGGAAGAGCTCGACGATGATAGTGAAATCCCTGTCTCCATTTTAAACGTCCCCAAATCCCTCTTGGCTAGTGACCCGGAATCGTACACCCCTCAACGGGTTGCGGTCGTTCCTTACCATTATTGGCGTCCGGAGCTGTATGAGATGCAGATTTACAAAGTGGCTGCAGCTAAACAAACCCAAAAGCAGCTCCAGCTCAAAACCCTCACATTCCATGCCAGCACCCTGTTGACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

108

Amino Acids

12.45

Weight (kDa)

5.02

Isoelectric Point (pI)

59.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 93 5.6e-09 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021441)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045931
rosa_laevigata RLG00000034371 RLG00000034374
rosa_samantha Rh5BG315800 Rh6DG010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 183, 184
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 5 cut(s) 97, 223, 257, 277, 283
AluI AGCT 5 cut(s) 97, 223, 257, 277, 283
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 251, 254, 274
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 238, 266, 286
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 3 cut(s) 252, 255, 275
BlsI GCNGC 3 cut(s) 253, 256, 276
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 184
Bse1I ACTGG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 183, 184
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 238, 266, 286
Bsh1285I CGRYCG 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 164, 218
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 183, 184
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 191
BspEI TCCGGA 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 36
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 220, 280
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 238, 266, 286
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 307
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 97, 155, 223, 251, 257, 277, 283
CviKI_1 RGCY 7 cut(s) 97, 155, 223, 251, 257, 277, 283
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
DraI TTTAAA 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 1 cut(s) 305
FaiI YATR 2 cut(s) 228, 303
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 252, 255, 275
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 252, 255, 275
FspBI CTAG 1 cut(s) 156
GluI GCNGC 3 cut(s) 252, 255, 275
GsuI CTGGAG 1 cut(s) 263
HapII CCGG 2 cut(s) 164, 218
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 1 cut(s) 305
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 2 cut(s) 67, 167
HpaII CCGG 2 cut(s) 164, 218
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 174, 318
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 174, 318
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 235, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 280
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 217
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 220, 282
LpnPI CCDG 6 cut(s) 49, 132, 177, 231, 293, 319
Lsp1109I GCAGC 3 cut(s) 238, 266, 286
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 104
MfeI CAATTG 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 322
MmeI TCCRAC 2 cut(s) 37, 66
MnlI CCTC 5 cut(s) 46, 82, 158, 189, 302
MroI TCCGGA 1 cut(s) 217
MseI TTAA 1 cut(s) 131
MspI CCGG 2 cut(s) 164, 218
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 220, 280
NciI CCSGG 1 cut(s) 164
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 67, 167
PkrI GCNGC 3 cut(s) 253, 256, 276
Psp124BI GAGCTC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 3 cut(s) 252, 255, 275
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 99, 138, 225, 259, 279, 285
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 322
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 322
TfiI GAWTC 2 cut(s) 67, 167
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 3 cut(s) 251, 254, 274
Tsp45I GTSAC 1 cut(s) 158
TspRI CASTG 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.