Rh6DG010800

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0021441
Physical Location & Seq
Forward (+)
1086841 .. 1087245
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG010800.1

Sequence Viewer

Length: 405 bp
ATGTCTTCTCTCCGACCAACAATCTCTTTCAAATCCAGTTCGAACTTCAATGAGCTTCAATGGGTGATTCAAATCCAAAAAATCCTAGATGAAGAGCTCGAGGATGATAGTGAAATCCCTATCTCCATTTTCAACGTCCCCAAATCCCTCTTGGCTAGTGACCCGGAATCGTACACCCCTCAACTGGTTGCGATAGGTCCTTACCATCACTGGCGTCCGGAACTGTATGAGATGGAGAGGTACAAAGTGGCTGCGGCTAAAAGAACCCAAAAGCAGCTCCAAACACTCAAATTCCAACACCTTGTTGACCAATTGACAAGGTTCGAGCCGAGGATTCGGGCTTGTTACCACAAGTACTTGGAGTTTAATGGCGAGACTTTGGGGTGGATGATGCATGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

134

Amino Acids

15.86

Weight (kDa)

6.2

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 131 3.3e-26 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021441)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045931
rosa_laevigata RLG00000034371 RLG00000034374
rosa_samantha Rh5BG315800 Rh6DG010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 3 cut(s) 173, 242, 356
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 5 cut(s) 31, 49, 59, 71, 133
AluBI AGCT 3 cut(s) 55, 97, 277
AluI AGCT 3 cut(s) 55, 97, 277
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 251, 274
ApoI RAATTY 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 238, 286
BccI CCATC 2 cut(s) 213, 226
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 86, 156
BisI GCNGC 3 cut(s) 252, 255, 275
BlsI GCNGC 3 cut(s) 253, 256, 276
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 3 cut(s) 36, 189, 215
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 109, 393
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 184
BseNI ACTGG 3 cut(s) 36, 189, 215
BseXI GCAGC 2 cut(s) 238, 286
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 164, 218
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 217
BspACI CCGC 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 41
BsrI ACTGG 3 cut(s) 36, 189, 215
BssECI CCNNGG 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 41
BstF5I GGATG 2 cut(s) 109, 393
BstMAI GTCTC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 238, 286
BtsCI GGATG 2 cut(s) 109, 393
BtsIMutI CAGTG 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 172, 241, 355
CviAII CATG 1 cut(s) 395
CviJI RGCY 8 cut(s) 55, 97, 155, 251, 257, 277, 328, 341
CviKI_1 RGCY 8 cut(s) 55, 97, 155, 251, 257, 277, 328, 341
CviQI GTAC 3 cut(s) 172, 241, 355
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 1 cut(s) 398
FaiI YATR 2 cut(s) 228, 396
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 252, 255, 275
FokI GGATG 2 cut(s) 116, 400
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 252, 255, 275
FspBI CTAG 2 cut(s) 86, 156
GluI GCNGC 3 cut(s) 252, 255, 275
HapII CCGG 2 cut(s) 164, 218
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 1 cut(s) 398
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 67, 167, 334
HpaII CCGG 2 cut(s) 164, 218
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 174, 307
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 174, 307
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 394
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 5 cut(s) 49, 170, 177, 196, 231
Lsp1109I GCAGC 2 cut(s) 238, 286
LweI GCATC 1 cut(s) 381
MaeI CTAG 2 cut(s) 86, 156
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 158, 344
MboII GAAGA 1 cut(s) 104
MfeI CAATTG 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 290, 311
MmeI TCCRAC 2 cut(s) 37, 319
MnlI CCTC 5 cut(s) 94, 158, 189, 231, 324
Mph1103I ATGCAT 1 cut(s) 396
MroI TCCGGA 1 cut(s) 217
MseI TTAA 1 cut(s) 366
MspI CCGG 2 cut(s) 164, 218
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 311
NciI CCSGG 1 cut(s) 164
NlaIII CATG 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 396
NspV TTCGAA 1 cut(s) 41
PaeR7I CTCGAG 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 3 cut(s) 67, 167, 334
PkrI GCNGC 3 cut(s) 253, 256, 276
PpuMI RGGWCCY 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 197
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PspXI VCTCGAGB 1 cut(s) 98
RsaI GTAC 3 cut(s) 173, 242, 356
RsaNI GTAC 3 cut(s) 172, 241, 355
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 3 cut(s) 252, 255, 275
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 99
SetI ASST 8 cut(s) 57, 99, 138, 199, 242, 279, 303, 323
SfaNI GCATC 1 cut(s) 381
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 290, 311
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 86, 156
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 41, 99, 324
TasI AATT 2 cut(s) 290, 311
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 3 cut(s) 67, 167, 334
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 2 cut(s) 251, 274
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 2 cut(s) 86, 156
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.