RLG00000034371

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021441
Physical Location & Seq
Reverse (-)
41591048 .. 41591869
822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034371

Sequence Viewer

Length: 597 bp
ATGTCTTCTCTCCAACCAATATTCTCTTACAAATCCAGTTCCAACTTCAGTGAGGATAAATGGGTGATTCAAATCAGAAAAACCGTACAGGAAGAGCTCGACGATGATAGTGAAATCCCTATCTCCATTTTCAACGTCCCCAAATCCCTCTTGGCTAGTGACCGGGAGTCGTACACCCCTCAACAGGTTGCGGTCGGTCCTTACCATTATTGGCGTCCGGAGCTGTATGAGATGCAGAGGTACAAAGTGGCTGCGGCTAAAAGAACCCAAAAGCAGCTCCAGCTCAAAACCCTCAAATTCCAGCACGTTGTTGACCGATTGACGAGGTCCGAGGTGAGGATTCGTGCTTGTTACCACAAGTACTTGGAGGTTAGTGGTGAGACTTTGGGGTGGATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGATGAATGATGAAGACTTGCCAAAGATCCAAGTCTCGAGTTGTTTTCACTTGCTGGACTTCTTGTACCACATGATCACCCCCAAGTTAGAAGCCGAGCCATCGGAAATCACAGAAGCCGTGGAATATGAGGCCACACCACACAACAGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

199

Amino Acids

23.14

Weight (kDa)

5.28

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 150 2e-28 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021441)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045931
rosa_laevigata RLG00000034371 RLG00000034374
rosa_samantha Rh5BG315800 Rh6DG010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 3 cut(s) 191, 254, 591
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 5 cut(s) 87, 173, 242, 362, 509
AfiI CCNNNNNNNGG 2 cut(s) 184, 336
AgsI TTSAA 2 cut(s) 71, 133
AhdI GACNNNNNGTC 1 cut(s) 166
AluBI AGCT 4 cut(s) 97, 223, 277, 283
AluI AGCT 4 cut(s) 97, 223, 277, 283
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 374, 481
AlwI GGATC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 478
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 399, 573
ApeKI GCWGC 2 cut(s) 251, 274
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 197, 327
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 4 cut(s) 76, 346, 389, 511
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 2 cut(s) 197, 327
BalI TGGCCA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 238, 286
BccI CCATC 2 cut(s) 391, 550
BceAI ACGGC 1 cut(s) 545
BclI TGATCA 1 cut(s) 516
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 374, 481
BfaI CTAG 2 cut(s) 156, 595
BisI GCNGC 4 cut(s) 252, 255, 275, 592
BlsI GCNGC 4 cut(s) 253, 256, 276, 593
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 197, 327
BmeRI GACNNNNNGTC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 197, 327
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 222, 397
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 330, 561
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 336
Bse1I ACTGG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 330, 561
BseGI GGATG 1 cut(s) 399
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 184, 336
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 238, 286
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 2 cut(s) 401, 575
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 2 cut(s) 163, 218
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 184, 336
BsmAI GTCTC 2 cut(s) 374, 481
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 401, 575
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 2 cut(s) 468, 516
BspACI CCGC 3 cut(s) 191, 254, 591
BspANI GGCC 2 cut(s) 401, 575
BspEI TCCGGA 1 cut(s) 217
BspPI GGATC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 330, 561
BssMI GATC 2 cut(s) 468, 516
BssNI GRCGYC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 399
BstKTI GATC 2 cut(s) 471, 519
BstMAI GTCTC 2 cut(s) 374, 481
BstMBI GATC 2 cut(s) 468, 516
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 3 cut(s) 220, 280, 407
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 238, 286
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 2 cut(s) 401, 575
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 197, 327
CseI GACGC 1 cut(s) 203
Csp6I GTAC 5 cut(s) 86, 172, 241, 361, 508
CviAII CATG 1 cut(s) 514
CviQI GTAC 5 cut(s) 86, 172, 241, 361, 508
DpnI GATC 2 cut(s) 470, 518
DpnII GATC 2 cut(s) 468, 516
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 87
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 197, 327
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 1 cut(s) 517
FaiI YATR 4 cut(s) 228, 441, 515, 570
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 4 cut(s) 252, 255, 275, 592
FokI GGATG 1 cut(s) 406
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 252, 255, 275, 592
FspBI CTAG 2 cut(s) 156, 595
GluI GCNGC 4 cut(s) 252, 255, 275, 592
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 401, 575
HapII CCGG 2 cut(s) 163, 218
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 1 cut(s) 517
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 3 cut(s) 67, 167, 340
HpaII CCGG 2 cut(s) 163, 218
HphI GGTGA 4 cut(s) 76, 346, 389, 511
Hpy166II GTNNAC 2 cut(s) 174, 313
Hpy188I TCNGA 3 cut(s) 77, 331, 547
Hpy188III TCNNGA 2 cut(s) 218, 478
Hpy8I GTNNAC 2 cut(s) 174, 313
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 135, 306
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 280, 407
HpySE526I ACGT 2 cut(s) 135, 306
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 517
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 2 cut(s) 468, 516
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 220, 282
LpnPI CCDG 8 cut(s) 49, 74, 170, 176, 231, 293, 314, 482
Lsp1109I GCAGC 2 cut(s) 238, 286
LweI GCATC 2 cut(s) 222, 397
MaeI CTAG 2 cut(s) 156, 595
MaeII ACGT 2 cut(s) 135, 306
MaeIII GTNAC 2 cut(s) 158, 350
MalI GATC 2 cut(s) 470, 518
MboI GATC 2 cut(s) 468, 516
MboII GAAGA 2 cut(s) 104, 467
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 37, 66
Mox20I TGGCCA 1 cut(s) 401
MroI TCCGGA 1 cut(s) 217
MscI TGGCCA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 2 cut(s) 163, 218
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 220, 280, 407
NciI CCSGG 1 cut(s) 164
NdeII GATC 2 cut(s) 468, 516
NlaIII CATG 1 cut(s) 517
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 67, 340
PflFI GACNNNGTC 1 cut(s) 325
PkrI GCNGC 4 cut(s) 253, 256, 276, 593
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 197, 327
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 5 cut(s) 87, 173, 242, 362, 509
RsaNI GTAC 5 cut(s) 86, 172, 241, 361, 508
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 87
SatI GCNGC 4 cut(s) 252, 255, 275, 592
Sau3AI GATC 2 cut(s) 468, 516
Sau96I GGNCC 2 cut(s) 197, 327
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 2 cut(s) 222, 397
Sfr274I CTCGAG 1 cut(s) 478
SinI GGWCC 2 cut(s) 197, 327
SlaI CTCGAG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 1 cut(s) 296
SsiI CCGC 3 cut(s) 191, 254, 591
SspI AATATT 1 cut(s) 21
SspMI CTAG 2 cut(s) 156, 595
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 138, 309
TaqI TCGA 3 cut(s) 99, 423, 479
TaqII GACCGA 2 cut(s) 185, 330
TasI AATT 1 cut(s) 296
TatI WGTACW 1 cut(s) 360
TauI GCSGC 2 cut(s) 257, 594
TfiI GAWTC 2 cut(s) 67, 340
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 2 cut(s) 251, 274
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 461, 468
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 197, 327
XapI RAATTY 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 478
XspI CTAG 2 cut(s) 156, 595
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.