RLG00000034374

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021441
Physical Location & Seq
Reverse (-)
41611240 .. 41612742
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034374

Sequence Viewer

Length: 588 bp
ATGTCTTCTATCCAACCAATATTCTGTTACAAATCCAGTTCCAACTTCAGTGAGGATCAATGGGTGATTCAAATCCGAAAAACCGTAGAGGAAGAGCTCGACGATGATAGTGAAATCCCTATCTCCATTTTCAACGTCTCCAAATCCCTCTTGGCTAGTGACCCGGAATCGTACATCCCTCAACAGGTGGCGCTCGGTCCTTACCATTATTGGCGTCCGGAGCTGTATGAGATGCAGAGGTCCGAGCTGAGGATTCGTGCTTGTTACCACAAGTACTTGGGGGTTAATGGTGACACTTTGGGGTGGATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGGTCCACGAATGCCCAAGAGTTTCTTCAAGTATGGCGCATTTGGTTGACTATGCAGGAAAGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGTACAAAAAGCTCTCACCATTCAAGATGAATGATGAAGACTTGCCAAAGATCCAAGTCTCGAGTTGTTTTCACTTGCTGGACTTCTTGTACCACATGATCACCCCCAAGTTAGAAGCCGAGCCATCGGAAATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

196

Amino Acids

22.63

Weight (kDa)

5.21

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 81 7.3e-07 Plant protein of unknown function
DUF247 PF03140 78 - 150 3.3e-08 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021441)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045931
rosa_laevigata RLG00000034371 RLG00000034374
rosa_samantha Rh5BG315800 Rh6DG010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 217
AclWI GGATC 2 cut(s) 63, 493
AcoI YGGCCR 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 4 cut(s) 173, 275, 452, 539
AfiI CCNNNNNNNGG 2 cut(s) 184, 249
AgsI TTSAA 4 cut(s) 71, 133, 384, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 4 cut(s) 97, 223, 247, 460
AluI AGCT 4 cut(s) 97, 223, 247, 460
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 142, 511
AlwI GGATC 2 cut(s) 63, 493
Ama87I CYCGRG 1 cut(s) 508
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 1 cut(s) 312
AspLEI GCGC 3 cut(s) 193, 394, 427
AspS9I GGNCC 3 cut(s) 197, 240, 358
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 4 cut(s) 76, 302, 456, 541
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 3 cut(s) 197, 240, 358
AxyI CCTNAGG 1 cut(s) 440
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 304, 580
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 142, 511
BfaI CTAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 3 cut(s) 197, 240, 358
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 197, 240, 358
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 222, 310, 436
BpiI GAAGAC 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 249
Bse1I ACTGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 217
BseGI GGATG 2 cut(s) 174, 312
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 184, 249
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 36
BshFI GGCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 2 cut(s) 164, 218
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 184, 249
BsmAI GTCTC 2 cut(s) 142, 511
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 3 cut(s) 55, 498, 546
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 217
BspPI GGATC 2 cut(s) 63, 493
BspQI GCTCTTC 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 1 cut(s) 36
BssMI GATC 3 cut(s) 55, 498, 546
BssNI GRCGYC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 248, 440
BstF5I GGATG 2 cut(s) 174, 312
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 3 cut(s) 193, 394, 427
BstKTI GATC 3 cut(s) 58, 501, 549
BstMAI GTCTC 2 cut(s) 142, 511
BstMBI GATC 3 cut(s) 55, 498, 546
BstMWI GCNNNNNNNGC 3 cut(s) 220, 320, 431
BstSCI CCNGG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 440
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 174, 312
BtsIMutI CAGTG 1 cut(s) 55
CfoI GCGC 3 cut(s) 193, 394, 427
Cfr13I GGNCC 3 cut(s) 197, 240, 358
CseI GACGC 1 cut(s) 203
Csp6I GTAC 4 cut(s) 172, 274, 451, 538
CviAII CATG 2 cut(s) 431, 544
CviJI RGCY 8 cut(s) 97, 155, 223, 247, 314, 460, 566, 571
CviKI_1 RGCY 8 cut(s) 97, 155, 223, 247, 314, 460, 566, 571
CviQI GTAC 4 cut(s) 172, 274, 451, 538
DdeI CTNAG 2 cut(s) 248, 440
DpnI GATC 3 cut(s) 57, 500, 548
DpnII GATC 3 cut(s) 55, 498, 546
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 197, 240, 358
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 2 cut(s) 434, 547
FaiI YATR 7 cut(s) 228, 354, 389, 408, 432, 545, 586
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 1 cut(s) 458
FatI CATG 2 cut(s) 430, 543
FbaI TGATCA 1 cut(s) 546
FokI GGATG 2 cut(s) 161, 319
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 1 cut(s) 156
GlaI GCGC 3 cut(s) 192, 393, 426
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 164, 218
HgaI GACGC 1 cut(s) 203
HhaI GCGC 3 cut(s) 193, 394, 427
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 2 cut(s) 434, 547
Hin6I GCGC 3 cut(s) 191, 392, 425
HinP1I GCGC 3 cut(s) 191, 392, 425
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 67, 167, 253
HpaII CCGG 2 cut(s) 164, 218
HphI GGTGA 4 cut(s) 76, 302, 456, 541
Hpy166II GTNNAC 2 cut(s) 361, 403
Hpy188I TCNGA 3 cut(s) 77, 244, 577
Hpy188III TCNNGA 3 cut(s) 218, 472, 508
Hpy8I GTNNAC 2 cut(s) 361, 403
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 235, 410, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 320, 431
HpyF3I CTNAG 2 cut(s) 248, 440
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 2 cut(s) 434, 547
HspAI GCGC 3 cut(s) 191, 392, 425
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 3 cut(s) 55, 498, 546
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 49, 170, 177, 231, 396, 512
LweI GCATC 3 cut(s) 222, 310, 436
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 26, 158, 263, 290
MalI GATC 3 cut(s) 57, 500, 548
MboI GATC 3 cut(s) 55, 498, 546
MboII GAAGA 3 cut(s) 104, 372, 497
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 314
MluNI TGGCCA 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 37, 66
MnlI CCTC 9 cut(s) 46, 82, 158, 189, 231, 243, 344, 349, 353
Mox20I TGGCCA 1 cut(s) 314
MroI TCCGGA 1 cut(s) 217
MscI TGGCCA 1 cut(s) 314
MseI TTAA 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 2 cut(s) 164, 218
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 220, 320, 431
NciI CCSGG 1 cut(s) 164
NdeII GATC 3 cut(s) 55, 498, 546
NlaIII CATG 2 cut(s) 434, 547
NmuCI GTSAC 2 cut(s) 158, 290
PaeR7I CTCGAG 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 67, 167, 253
Psp124BI GAGCTC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 197, 240, 358
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 4 cut(s) 173, 275, 452, 539
RsaNI GTAC 4 cut(s) 172, 274, 451, 538
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 3 cut(s) 55, 498, 546
Sau96I GGNCC 3 cut(s) 197, 240, 358
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 99
SetI ASST 8 cut(s) 99, 138, 189, 225, 242, 249, 360, 462
SfaNI GCATC 3 cut(s) 222, 310, 436
Sfr274I CTCGAG 1 cut(s) 508
SinI GGWCC 3 cut(s) 197, 240, 358
SlaI CTCGAG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 99, 336, 509
TaqII GACCGA 1 cut(s) 185
TatI WGTACW 2 cut(s) 273, 450
TfiI GAWTC 3 cut(s) 67, 167, 253
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 158, 290
Tsp45I GTSAC 2 cut(s) 158, 290
TspDTI ATGAA 2 cut(s) 491, 498
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 3 cut(s) 197, 240, 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 508
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.