RchiOBHm_Chr5g0047051

Protein of unknown function (DUF502)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
43296014 .. 43298189
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 177 bp
ATGAAGCTCATGTCAAAATGCGATCAAAACATGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAGGATCCAAACTATTTATTCACTGGCTTCCTTCCATGTTTGATGATTCAGCTAAATTAA

Protein Analysis

58

Amino Acids

6.67

Weight (kDa)

7.8

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022777)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047051
rosa_roxburghii Rroxscaffold_1G00002640 Rroxscaffold_1G00044250
rosa_samantha Rh4AG021200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AclWI GGATC 2 cut(s) 116, 129
AcoI YGGCCR 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 60, 74
AgsI TTSAA 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 7, 169
AluI AGCT 2 cut(s) 7, 169
AlwI GGATC 2 cut(s) 116, 129
AoxI GGCC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 121
BccI CCATC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 74
Bse1I ACTGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 60, 74
BseNI ACTGG 1 cut(s) 145
BshFI GGCC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 60, 74
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 22, 121
BspANI GGCC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 2 cut(s) 116, 129
BsrI ACTGG 1 cut(s) 145
BssMI GATC 2 cut(s) 22, 121
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 36
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 2 cut(s) 25, 124
BstMBI GATC 2 cut(s) 22, 121
BstNSI RCATGY 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 36
CviAII CATG 3 cut(s) 10, 31, 153
CviJI RGCY 5 cut(s) 7, 38, 53, 144, 169
CviKI_1 RGCY 5 cut(s) 7, 38, 53, 144, 169
DpnI GATC 2 cut(s) 24, 123
DpnII GATC 2 cut(s) 22, 121
EaeI YGGCCR 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 88
FaeI CATG 3 cut(s) 13, 34, 156
FaiI YATR 5 cut(s) 11, 32, 59, 84, 154
FatI CATG 3 cut(s) 9, 30, 152
FokI GGATG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 3 cut(s) 13, 34, 156
HinfI GANTC 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 49, 125, 158
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 34, 86
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 3 cut(s) 13, 34, 156
Kzo9I GATC 2 cut(s) 22, 121
LpnPI CCDG 2 cut(s) 104, 126
LweI GCATC 1 cut(s) 73
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 24, 123
MboI GATC 2 cut(s) 22, 121
MflI RGATCY 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 1 cut(s) 172
MluNI TGGCCA 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 53
Mph1103I ATGCAT 1 cut(s) 88
MscI TGGCCA 1 cut(s) 53
MseI TTAA 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 53
NdeII GATC 2 cut(s) 22, 121
NlaIII CATG 3 cut(s) 13, 34, 156
NlaIV GGNNCC 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 34
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 121
SaqAI TTAA 1 cut(s) 175
Sau3AI GATC 2 cut(s) 22, 121
SetI ASST 3 cut(s) 9, 73, 171
SfaNI GCATC 1 cut(s) 73
SgeI CNNG 8 cut(s) 22, 43, 47, 55, 81, 131, 153, 165
Sse9I AATT 1 cut(s) 172
TaiI ACGT 1 cut(s) 73
TasI AATT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 175
Tru9I TTAA 1 cut(s) 175
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 17, 85, 93
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 74
XceI RCATGY 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.