Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0022777

Physical Location & Seq

Genomic Coordinates Reverse (-)

3115744 .. 3118212

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCATTTCACACGAATTTGCGTGGAAATTCCGCTTATACCCAGCAAATTGCAATCGAATGATAGTTATTGGGTTACCGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCGAAGCAGTCTGCTAAGCTGCATCCTTCTCTGCCGTCTGGTGGTGGTCTTTTAAAAACTGCTCCAATCTGTGAAATTGTTGGTGGTGATTCTGTGGCTAACTGGATTTTGGGAGTTATCTGTGATCTAAAATTGCCGGAGTTACCCTCCATTGCTCCAATTCCGCTGCGAACGATGTTGTTCAATGGCTTAGATCAAAACATGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAGGACCAAATGACACAGCTTGCATCAGTCCACGCACAATGCAATAGACCTGTGATACCAACCCCAGCCATCAATGATGCGTATCGACCCGAAATGCCTCAAACTGTTCCAGATTCACAGCTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

175

Amino Acids

19.25

Weight (kDa)

7.71

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022777)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047051
rosa_roxburghii	Rroxscaffold_1G00002640 Rroxscaffold_1G00044250
rosa_samantha	Rh4AG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	2 cut(s)	32, 275
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	15, 27
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	152, 342, 356
AgsI	TTSAA	2 cut(s)	295, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	3 cut(s)	130, 418, 520
AluI	AGCT	3 cut(s)	130, 418, 520
AoxI	GGCC	2 cut(s)	89, 333
ApeKI	GCWGC	2 cut(s)	130, 277
ApoI	RAATTY	2 cut(s)	15, 27
Asp718I	GGTACC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	403
BaeI	ACNNNNGTAYC	2 cut(s)	66, 99
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	117, 264
BccI	CCATC	2 cut(s)	344, 476
BceAI	ACGGC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	131, 278
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	2 cut(s)	132, 279
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	4 cut(s)	142, 355, 431, 466
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
Bpu1102I	GCTNAGC	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	78, 86, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 342, 356
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	78, 86, 92
BseGI	GGATG	2 cut(s)	133, 346
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	152, 342, 356
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	117, 264
BseYI	CCCAGC	2 cut(s)	41, 463
BshFI	GGCC	2 cut(s)	91, 335
BshNI	GGYRCC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	152, 342, 356
BsnI	GGCC	2 cut(s)	91, 335
Bsp143I	GATC	2 cut(s)	235, 304
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	32, 275
BspANI	GGCC	2 cut(s)	91, 335
BspLI	GGNNCC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	78, 86, 92
BssMI	GATC	2 cut(s)	235, 304
BssT1I	CCWWGG	2 cut(s)	86, 92
Bst4CI	ACNGT	1 cut(s)	505
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	318, 420
BstDEI	CTNAG	2 cut(s)	126, 301
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	133, 346
BstKTI	GATC	2 cut(s)	238, 307
BstMBI	GATC	2 cut(s)	235, 304
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	117, 264
BsuRI	GGCC	2 cut(s)	91, 335
BtsCI	GGATG	2 cut(s)	133, 346
Cac8I	GCNNGC	2 cut(s)	318, 420
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	126, 301
DpnI	GATC	2 cut(s)	237, 306
DpnII	GATC	2 cut(s)	235, 304
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	86, 92
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	86, 92
EcoT22I	ATGCAT	2 cut(s)	6, 370
ErhI	CCWWGG	2 cut(s)	86, 92
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	38, 314, 341, 366
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	131, 278
FokI	GGATG	2 cut(s)	120, 333
Fsp4HI	GCNGC	2 cut(s)	131, 278
GluI	GCNGC	2 cut(s)	131, 278
GsaI	CCCAGC	2 cut(s)	45, 467
HaeIII	GGCC	2 cut(s)	91, 335
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	2 cut(s)	200, 512
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	401, 509
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	147, 331, 407
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	7 cut(s)	4, 52, 133, 316, 368, 422, 441
HpyF3I	CTNAG	2 cut(s)	126, 301
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	235, 304
LmnI	GCTCC	2 cut(s)	178, 271
LpnPI	CCDG	8 cut(s)	55, 135, 199, 261, 386, 462, 477, 522
Lsp1109I	GCAGC	2 cut(s)	117, 264
LweI	GCATC	4 cut(s)	142, 355, 431, 466
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	3 cut(s)	73, 252, 391
MalI	GATC	2 cut(s)	237, 306
MboI	GATC	2 cut(s)	235, 304
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	6 cut(s)	15, 27, 47, 186, 242, 270
MluNI	TGGCCA	1 cut(s)	335
MnlI	CCTC	4 cut(s)	73, 99, 268, 507
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	2 cut(s)	6, 370
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	2 cut(s)	277, 520
MspI	CCGG	1 cut(s)	248
NdeII	GATC	2 cut(s)	235, 304
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	84
NsiI	ATGCAT	2 cut(s)	6, 370
NspI	RCATGY	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	200, 512
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	132, 279
Ppu21I	YACGTR	1 cut(s)	353
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	2 cut(s)	41, 463
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	131, 278
Sau3AI	GATC	2 cut(s)	235, 304
Sau96I	GGNCC	1 cut(s)	403
SetI	ASST	7 cut(s)	84, 110, 132, 355, 420, 451, 522
SfaNI	GCATC	4 cut(s)	142, 355, 431, 466
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	6 cut(s)	15, 27, 47, 186, 242, 270
SsiI	CCGC	2 cut(s)	32, 275
StyI	CCWWGG	2 cut(s)	86, 92
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	56, 484
TasI	AATT	6 cut(s)	15, 27, 47, 186, 242, 270
TfiI	GAWTC	2 cut(s)	200, 512
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	2 cut(s)	130, 277
TspDTI	ATGAA	2 cut(s)	367, 375
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	15, 27
XceI	RCATGY	1 cut(s)	316
Zsp2I	ATGCAT	2 cut(s)	6, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.