Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0022777

Physical Location & Seq

Genomic Coordinates Forward (+)

3970315 .. 3971819

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGATCAAAACATGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGAGTTCATTACTTCATCAGTTACCCTTCAGGATCCAAACTATTTATTCACTGGCTTCCTTCCATATTTGATGATTCAGCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

64

Amino Acids

7.43

Weight (kDa)

5.0

Isoelectric Point (pI)

20.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022777)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047051
rosa_roxburghii	Rroxscaffold_1G00002640 Rroxscaffold_1G00044250
rosa_samantha	Rh4AG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AccB7I	CCANNNNNTGG	1 cut(s)	92
AclWI	GGATC	2 cut(s)	134, 147
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	78, 92
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AlwI	GGATC	2 cut(s)	134, 147
AoxI	GGCC	2 cut(s)	22, 69
Asp718I	GGTACC	1 cut(s)	15
BalI	TGGCCA	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	15
BccI	CCATC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	17, 141
BmsI	GCATC	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	19, 25
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 92
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	19, 25
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	78, 92
BseNI	ACTGG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	24, 71
BshNI	GGYRCC	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	78, 92
BsnI	GGCC	2 cut(s)	24, 71
Bsp143I	GATC	2 cut(s)	40, 139
BspANI	GGCC	2 cut(s)	24, 71
BspLI	GGNNCC	2 cut(s)	17, 141
BspPI	GGATC	2 cut(s)	134, 147
BspT107I	GGYRCC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	19, 25
BssMI	GATC	2 cut(s)	40, 139
BssT1I	CCWWGG	2 cut(s)	19, 25
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	43, 142
BstMBI	GATC	2 cut(s)	40, 139
BstNSI	RCATGY	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	24, 71
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	6 cut(s)	24, 30, 56, 71, 162, 187
CviKI_1	RGCY	6 cut(s)	24, 30, 56, 71, 162, 187
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	2 cut(s)	42, 141
DpnII	GATC	2 cut(s)	40, 139
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	19, 25
Eco57I	CTGAAG	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	19, 25
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	19, 25
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 77, 102, 172
FatI	CATG	1 cut(s)	48
FokI	GGATG	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	24, 71
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	67, 143, 176
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	52, 104
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	52
KpnI	GGTACC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	40, 139
LpnPI	CCDG	2 cut(s)	122, 144
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	42, 141
MboI	GATC	2 cut(s)	40, 139
MflI	RGATCY	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	71
MnlI	CCTC	1 cut(s)	6
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	71
NdeII	GATC	2 cut(s)	40, 139
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	17, 141
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	17, 141
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	193
Sau3AI	GATC	2 cut(s)	40, 139
SetI	ASST	3 cut(s)	17, 91, 189
SfaNI	GCATC	1 cut(s)	91
SgeI	CNNG	9 cut(s)	32, 38, 43, 61, 65, 73, 99, 149, 171
Sse9I	AATT	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	19, 25
TaiI	ACGT	1 cut(s)	91
TasI	AATT	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	193
Tru9I	TTAA	1 cut(s)	193
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	103, 111
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	92
XceI	RCATGY	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.