Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0022777

Physical Location & Seq

Genomic Coordinates Forward (+)

63061137 .. 63064060

Gene Structure 2924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCCAAGAAGTGGTTGTACACTGTGTCCTACCCTATTGGTAGGTTATCTCAAGAAATTAACATCTTAGGCTCTTATGAGTGTTCGACAGACAGCGTGATCCTATTTCCAATAGCCATCACTTTCTACATAACTTGGTGGTTTATTCACTTTGTGGATGGCTTCTTCTCTCCAATATATGCTCAGCTAGGAATCAACATTTTCGGTCTTGGATTCGTAACTTACATTACATTCATATTTTTGGTTGGGGTGTTCATGTCATCATGGCTGGGTGCATCTGTCCTGGGTCTCGGTGAGTGGTTTATCAAAAGAATGCCATTCGTTCGTCATATCTACAATGCCTCCAAGCATATTAGTTCCGCCATATCCCCAGATCAAAACATGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAGGACCAAATGACACAGCTTGCATCAGTCCACGCACAATGCAATAGACCTGTGATACCAACCCCAGCCATCAATGATGTGTATCGACCCGAAATGCCTCAAACTGTTCCAGATTCGCAGCTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

198

Amino Acids

22.49

Weight (kDa)

6.96

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF502	PF04367	74 - 158	6.9e-22	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022777)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047051
rosa_roxburghii	Rroxscaffold_1G00002640 Rroxscaffold_1G00044250
rosa_samantha	Rh4AG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	12, 425
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	2 cut(s)	3, 402
AcuI	CTGAAG	1 cut(s)	452
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	12, 411, 425
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	3 cut(s)	187, 487, 589
AluI	AGCT	3 cut(s)	187, 487, 589
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	2 cut(s)	3, 402
ApeKI	GCWGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	472
BalI	TGGCCA	2 cut(s)	5, 404
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BccI	CCATC	4 cut(s)	125, 152, 413, 545
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	587
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	3 cut(s)	284, 424, 500
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 411, 425
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	163, 415
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	12, 411, 425
BseMII	CTCAG	1 cut(s)	197
BseYI	CCCAGC	2 cut(s)	268, 532
BshFI	GGCC	2 cut(s)	5, 404
BslI	CCNNNNNNNGG	3 cut(s)	12, 411, 425
BsmAI	GTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	5, 404
Bso31I	GGTCTC	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	99, 373
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	5, 404
BspCNI	CTCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	99, 373
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	25, 574
BstAUI	TGTACA	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	387, 489
BstDEI	CTNAG	2 cut(s)	67, 183
BstF5I	GGATG	2 cut(s)	163, 415
BstKTI	GATC	2 cut(s)	102, 376
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	99, 373
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	5, 404
BtsCI	GGATG	2 cut(s)	163, 415
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	387, 489
Cfr13I	GGNCC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	256, 264, 382
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	67, 183
DpnI	GATC	2 cut(s)	101, 375
DpnII	GATC	2 cut(s)	99, 373
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	3, 402
EciI	GGCGGA	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	439
FaeI	CATG	3 cut(s)	259, 267, 385
FatI	CATG	3 cut(s)	255, 263, 381
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	2 cut(s)	170, 402
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	587
GsaI	CCCAGC	2 cut(s)	272, 536
HaeIII	GGCC	2 cut(s)	5, 404
Hin1II	CATG	3 cut(s)	259, 267, 385
HinfI	GANTC	3 cut(s)	192, 213, 581
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	21, 499
Hpy188III	TCNNGA	3 cut(s)	53, 470, 578
Hpy8I	GTNNAC	2 cut(s)	21, 499
HpyAV	CCTTC	2 cut(s)	400, 476
HpyCH4III	ACNGT	2 cut(s)	25, 574
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	5 cut(s)	275, 385, 437, 491, 510
HpyF3I	CTNAG	2 cut(s)	67, 183
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	259, 267, 385
Kzo9I	GATC	2 cut(s)	99, 373
LpnPI	CCDG	8 cut(s)	254, 269, 296, 384, 455, 531, 546, 591
LweI	GCATC	3 cut(s)	284, 424, 500
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	2 cut(s)	217, 460
MalI	GATC	2 cut(s)	101, 375
MboI	GATC	2 cut(s)	99, 373
MboII	GAAGA	1 cut(s)	157
MlsI	TGGCCA	2 cut(s)	5, 404
MluCI	AATT	1 cut(s)	57
MluNI	TGGCCA	2 cut(s)	5, 404
MnlI	CCTC	2 cut(s)	352, 576
Mox20I	TGGCCA	2 cut(s)	5, 404
Mph1103I	ATGCAT	1 cut(s)	439
MscI	TGGCCA	2 cut(s)	5, 404
MseI	TTAA	1 cut(s)	60
Msp20I	TGGCCA	2 cut(s)	5, 404
MspA1I	CMGCKG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	284
NdeII	GATC	2 cut(s)	99, 373
NlaIII	CATG	3 cut(s)	259, 267, 385
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	385
PctI	GAATGC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	192, 213, 581
PflMI	CCANNNNNTGG	2 cut(s)	12, 425
PkrI	GCNGC	1 cut(s)	588
Ppu21I	YACGTR	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	2 cut(s)	268, 532
PspGI	CCWGG	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	2 cut(s)	99, 373
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	6 cut(s)	47, 189, 424, 489, 520, 591
SfaNI	GCATC	3 cut(s)	284, 424, 500
SinI	GGWCC	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	25, 574
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	86, 553
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	192, 213, 581
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	1 cut(s)	586
TspDTI	ATGAA	4 cut(s)	223, 244, 436, 444
TspRI	CASTG	1 cut(s)	28
Van91I	CCANNNNNTGG	2 cut(s)	12, 425
VpaK11BI	GGWCC	1 cut(s)	472
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.