Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022774

Physical Location & Seq

Genomic Coordinates Forward (+)

74778659 .. 74781464

Gene Structure 2806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCTGCCAACGATGACATGATGATCGATGAGTATGAACAGAAGCAAGTGACTGCTCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTGCTACCCTGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACAATGATGTTAGATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGTTATCAAAGTGACTGACACTGCCCTTCGAGATGACCTTGGTTTCAATCACATTCCTAGGTTTATAGTGGCCAACGTGATGTTCATTGTTGGGCTCACAAATGAACTGAGAGCAGCTATTGCTAACTATTTTCGTGTCTACAAGGTGGGCAACGAAAACAGTCATAAAAGGTTTTCTTTGATGGGCTCTGCTCTTCATCCATTCCTTGTTTCAGTTATCATTGCAGCTGTCACTTCTGAGCTCCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAAGATGCAAGGACTGCCTAGATGCGTGGAGGAGATTATGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTATATCCAAAGACGGGTCGTGTTTGTGTTCCGATTGATATCACCCGTTGCGAGGAGTTTGATCCTACTGCAGTTCCAACCCTTTCCACTGTATGTGATAGACCCATGGTTTTCTTCAGTCCCCATACACATTTTCTTTCTTGGTGGGAGAGTATGCTATCTATAGTCAAACATTCTGCATATTCAACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

286

Amino Acids

32.93

Weight (kDa)

6.36

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	40 - 236	3.4e-28	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022774)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068871
rosa_samantha	Rh5AG451100 Rh5BG469500 Rh5CG491900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	2 cut(s)	191, 276
AcuI	CTGAAG	1 cut(s)	766
AfiI	CCNNNNNNNGG	2 cut(s)	680, 718
AgsI	TTSAA	3 cut(s)	253, 630, 852
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AloI	GAACNNNNNNTCC	2 cut(s)	575, 607
AluBI	AGCT	5 cut(s)	170, 323, 434, 448, 523
AluI	AGCT	5 cut(s)	170, 323, 434, 448, 523
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	722
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	191, 276
ApeKI	GCWGC	5 cut(s)	159, 320, 431, 520, 535
AseI	ATTAAT	1 cut(s)	501
AspA2I	CCTAGG	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	700
AvrII	CCTAGG	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	3 cut(s)	303, 395, 450
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	5 cut(s)	146, 332, 443, 522, 532
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	452
BfaI	CTAG	3 cut(s)	264, 570, 609
BfmI	CTRYAG	2 cut(s)	735, 828
BisI	GCNGC	6 cut(s)	160, 194, 321, 432, 521, 536
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	6 cut(s)	161, 195, 322, 433, 522, 537
Bme1390I	CCNGG	2 cut(s)	182, 452
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	2 cut(s)	182, 452
BmsI	GCATC	2 cut(s)	546, 563
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	704
BsaJI	CCNNGG	4 cut(s)	244, 263, 451, 771
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 575, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 718
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	704
BseBI	CCWGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	244, 263, 451, 771
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	2 cut(s)	680, 718
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	90, 177, 305, 435
BseRI	GAGGAG	3 cut(s)	116, 596, 734
BseXI	GCAGC	5 cut(s)	146, 332, 443, 522, 532
BshFI	GGCC	2 cut(s)	193, 278
BshNI	GGYRCC	1 cut(s)	655
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	771
BslI	CCNNNNNNNGG	2 cut(s)	680, 718
BsmFI	GGGAC	1 cut(s)	771
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	193, 278
Bsp1286I	GDGCHC	3 cut(s)	303, 395, 450
Bsp143I	GATC	2 cut(s)	24, 727
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	193, 278
BspCNI	CTCAG	4 cut(s)	91, 176, 306, 436
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	4 cut(s)	244, 263, 451, 771
BssMI	GATC	2 cut(s)	24, 727
BssT1I	CCWWGG	3 cut(s)	244, 263, 771
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	368, 757, 856
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	2 cut(s)	326, 565
BstC8I	GCNNGC	2 cut(s)	6, 191
BstDEI	CTNAG	4 cut(s)	99, 163, 314, 444
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	27, 730
BstMBI	GATC	2 cut(s)	24, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 326, 565
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	180, 450
BstSFI	CTRYAG	2 cut(s)	735, 828
BstV1I	GCAGC	5 cut(s)	146, 332, 443, 522, 532
BstV2I	GAAGAC	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	193, 278
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 753
Cac8I	GCNNGC	2 cut(s)	6, 191
CaiI	CAGNNNCTG	1 cut(s)	170
ClaI	ATCGAT	1 cut(s)	27
CviAII	CATG	3 cut(s)	19, 619, 772
CviJI	RGCY	9 cut(s)	170, 193, 278, 301, 323, 393, 434, 448, 523
CviKI_1	RGCY	9 cut(s)	170, 193, 278, 301, 323, 393, 434, 448, 523
DdeI	CTNAG	4 cut(s)	99, 163, 314, 444
DpnI	GATC	2 cut(s)	26, 729
DpnII	GATC	2 cut(s)	24, 727
EaeI	YGGCCR	2 cut(s)	191, 276
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	3 cut(s)	244, 263, 771
Eco24I	GRGCYC	3 cut(s)	303, 395, 450
Eco32I	GATATC	1 cut(s)	706
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	766
Eco81I	CCTNAGG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	3 cut(s)	244, 263, 771
EcoT38I	GRGCYC	3 cut(s)	303, 395, 450
ErhI	CCWWGG	3 cut(s)	244, 263, 771
FaeI	CATG	3 cut(s)	22, 622, 775
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FaqI	GGGAC	1 cut(s)	771
FatI	CATG	3 cut(s)	18, 618, 771
FauNDI	CATATG	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	160, 194, 321, 432, 521, 536
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	3 cut(s)	303, 395, 450
Fsp4HI	GCNGC	6 cut(s)	160, 194, 321, 432, 521, 536
FspBI	CTAG	3 cut(s)	264, 570, 609
GluI	GCNGC	6 cut(s)	160, 194, 321, 432, 521, 536
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	193, 278
HapII	CCGG	1 cut(s)	451
Hin1II	CATG	3 cut(s)	22, 622, 775
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	700
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	136, 445, 699
Hpy188III	TCNNGA	3 cut(s)	165, 236, 543
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	3 cut(s)	368, 757, 856
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	7 cut(s)	62, 431, 488, 538, 559, 737, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 326, 565
HpyF3I	CTNAG	4 cut(s)	99, 163, 314, 444
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	22, 622, 775
Kzo9I	GATC	2 cut(s)	24, 727
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	4 cut(s)	61, 167, 453, 517
LpnPI	CCDG	9 cut(s)	18, 72, 111, 150, 167, 175, 194, 464, 528
Lsp1109I	GCAGC	5 cut(s)	146, 332, 443, 522, 532
LweI	GCATC	2 cut(s)	546, 563
MaeI	CTAG	3 cut(s)	264, 570, 609
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	49, 217, 436
MalI	GATC	2 cut(s)	26, 729
MboI	GATC	2 cut(s)	24, 727
MboII	GAAGA	4 cut(s)	392, 506, 565, 772
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	3 cut(s)	303, 395, 450
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	7 cut(s)	60, 94, 99, 490, 574, 616, 712
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	2 cut(s)	501, 650
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	2 cut(s)	434, 523
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	2 cut(s)	182, 452
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	186, 326, 565
NciI	CCSGG	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	2 cut(s)	24, 727
NlaIII	CATG	3 cut(s)	22, 622, 775
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	3 cut(s)	49, 217, 436
PciSI	GCTCTTC	1 cut(s)	405
PctI	GAATGC	1 cut(s)	70
PkrI	GCNGC	6 cut(s)	161, 195, 322, 433, 522, 537
PshBI	ATTAAT	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	657
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	170
PvuII	CAGCTG	2 cut(s)	434, 523
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	501, 650
SatI	GCNGC	6 cut(s)	160, 194, 321, 432, 521, 536
Sau3AI	GATC	2 cut(s)	24, 727
ScrFI	CCNGG	2 cut(s)	182, 452
SduI	GDGCHC	3 cut(s)	303, 395, 450
SfaNI	GCATC	2 cut(s)	546, 563
SfcI	CTRYAG	2 cut(s)	735, 828
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	194
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	264, 570, 609
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	180, 450
StyI	CCWWGG	3 cut(s)	244, 263, 771
TaaI	ACNGT	3 cut(s)	368, 757, 856
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	27, 235
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	501, 650
Tru9I	TTAA	2 cut(s)	501, 650
TscAI	CASTG	2 cut(s)	232, 760
TseFI	GTSAC	3 cut(s)	49, 217, 436
TseI	GCWGC	5 cut(s)	159, 320, 431, 520, 535
Tsp45I	GTSAC	3 cut(s)	49, 217, 436
TspDTI	ATGAA	5 cut(s)	51, 280, 324, 392, 653
TspRI	CASTG	2 cut(s)	232, 760
VspI	ATTAAT	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	3 cut(s)	264, 570, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.