Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0022774

Physical Location & Seq

Genomic Coordinates Forward (+)

68478515 .. 68494220

Gene Structure 15706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG491900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTGCTACCCTGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACAATGATGTTAGATACTGCTGCTCAGGAGCTGATCTGTGCCTGGAATGCTGGCCGCTTATGACAATTGCTATCAAAGTGACTGACACTGCCCTTCGAGATGACCTTGGTTTCAATCACATTCCTAGGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTCGGCAACGAAAACAGTCATAAAAAGTTTTCTTTGATGGGCCCTGGTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATCGTTTTCCAGTCAAAAGATATTTTATACTCTCCGGGGAAAGTGGCAAGATAATAGACGAACCTTCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAAGATGCAAGGACTGCCTAGATGCGTGGAGGAGATTGTGTTCTCTTATACCTACCCAAGACTTGACATGGAGGTTTTGTCTGAAATGGCCAACTCCAGCTGTGGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAAGTATGTACTTGAATCCGAATCAAAGCGTGATGGGGAAGATTCTGATGTGCCCGAGTGTCCAGTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTTGGTGGCAATCTTCTTGTGATGTACAGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCGCCGAATTTATGTCAATTTAGAAACGCTCAAGCACAAAGGGGATGGATTTGCTACCAAGATTCAAGACAAACTGAGGATAATTGTGAATCGAATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

316

Amino Acids

36.35

Weight (kDa)

5.94

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	22 - 202	4.9e-16	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022774)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068871
rosa_samantha	Rh5AG451100 Rh5BG469500 Rh5CG491900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	799
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	1 cut(s)	140
AcoI	YGGCCR	3 cut(s)	137, 222, 612
AcsI	RAATTY	1 cut(s)	855
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	669, 785
AfiI	CCNNNNNNNGG	1 cut(s)	627
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	199, 457, 643, 652, 674, 914
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	126, 325
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	6 cut(s)	116, 269, 496, 624, 760, 793
AluI	AGCT	6 cut(s)	116, 269, 496, 624, 760, 793
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	713
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	4 cut(s)	137, 222, 322, 612
ApaI	GGGCCC	1 cut(s)	326
ApeKI	GCWGC	5 cut(s)	105, 266, 493, 508, 847
ApoI	RAATTY	1 cut(s)	855
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	647
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	2 cut(s)	322, 323
AsuC2I	CCSGG	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	713
AvrII	CCTAGG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	2 cut(s)	326, 714
BalI	TGGCCA	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	249, 326
BbsI	GAAGAC	2 cut(s)	323, 474
BbvI	GCAGC	5 cut(s)	92, 278, 495, 505, 834
BccI	CCATC	3 cut(s)	313, 686, 887
BciT130I	CCWGG	2 cut(s)	128, 327
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	2 cut(s)	210, 543
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	6 cut(s)	106, 140, 267, 494, 509, 848
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	6 cut(s)	107, 141, 268, 495, 510, 849
Bme1390I	CCNGG	3 cut(s)	128, 327, 425
BmeT110I	CYCGRG	1 cut(s)	713
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	322, 323
BmiI	GGNNCC	2 cut(s)	324, 834
BmrFI	CCNGG	3 cut(s)	128, 327, 425
BmsI	GCATC	2 cut(s)	519, 536
BpiI	GAAGAC	2 cut(s)	323, 474
BpmI	CTGGAG	1 cut(s)	604
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	190, 209, 325, 424
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	3 cut(s)	399, 722, 809
Bse21I	CCTNAGG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	2 cut(s)	128, 327
BseDI	CCNNGG	4 cut(s)	190, 209, 325, 424
BseGI	GGATG	2 cut(s)	334, 898
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	36, 123, 251, 914
BseNI	ACTGG	3 cut(s)	399, 722, 809
BseRI	GAGGAG	3 cut(s)	62, 569, 785
BseSI	GKGCMC	2 cut(s)	326, 714
BseXI	GCAGC	5 cut(s)	92, 278, 495, 505, 834
BshFI	GGCC	4 cut(s)	139, 224, 324, 614
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	424, 836
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmI	GAATGC	2 cut(s)	16, 137
BsnI	GGCC	4 cut(s)	139, 224, 324, 614
BsoBI	CYCGRG	1 cut(s)	713
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	3 cut(s)	249, 326, 714
Bsp13I	TCCGGA	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	2 cut(s)	118, 350
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	4 cut(s)	139, 224, 324, 614
BspCNI	CTCAG	4 cut(s)	37, 122, 252, 915
BspEI	TCCGGA	1 cut(s)	835
BspLI	GGNNCC	2 cut(s)	324, 834
BspMI	ACCTGC	1 cut(s)	799
BspTI	CTTAAG	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	3 cut(s)	399, 722, 809
BssECI	CCNNGG	4 cut(s)	190, 209, 325, 424
BssMI	GATC	2 cut(s)	118, 350
BssT1I	CCWWGG	2 cut(s)	190, 209
Bst2UI	CCWGG	2 cut(s)	128, 327
Bst4CI	ACNGT	2 cut(s)	299, 788
Bst6I	CTCTTC	2 cut(s)	638, 822
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	2 cut(s)	272, 538
BstAUI	TGTACA	1 cut(s)	783
BstC8I	GCNNGC	2 cut(s)	6, 137
BstDEI	CTNAG	4 cut(s)	45, 109, 260, 923
BstF5I	GGATG	2 cut(s)	334, 898
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	2 cut(s)	121, 353
BstMBI	GATC	2 cut(s)	118, 350
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 272, 538
BstNI	CCWGG	2 cut(s)	128, 327
BstSCI	CCNGG	3 cut(s)	126, 325, 423
BstSLI	GKGCMC	2 cut(s)	326, 714
BstV1I	GCAGC	5 cut(s)	92, 278, 495, 505, 834
BstV2I	GAAGAC	2 cut(s)	323, 474
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	4 cut(s)	139, 224, 324, 614
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	334, 898
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	6, 137
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	322, 323
Csp6I	GTAC	2 cut(s)	668, 784
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	1 cut(s)	592
CviQI	GTAC	2 cut(s)	668, 784
DdeI	CTNAG	4 cut(s)	45, 109, 260, 923
DpnI	GATC	2 cut(s)	120, 352
DpnII	GATC	2 cut(s)	118, 350
EaeI	YGGCCR	3 cut(s)	137, 222, 612
Eam1104I	CTCTTC	2 cut(s)	638, 822
EarI	CTCTTC	2 cut(s)	638, 822
Eco130I	CCWWGG	2 cut(s)	190, 209
Eco24I	GRGCYC	2 cut(s)	249, 326
Eco57I	CTGAAG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	126, 325
EcoT14I	CCWWGG	2 cut(s)	190, 209
EcoT38I	GRGCYC	2 cut(s)	249, 326
ErhI	CCWWGG	2 cut(s)	190, 209
FaeI	CATG	1 cut(s)	595
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	1 cut(s)	591
Fnu4HI	GCNGC	6 cut(s)	106, 140, 267, 494, 509, 848
FokI	GGATG	2 cut(s)	321, 905
FriOI	GRGCYC	2 cut(s)	249, 326
Fsp4HI	GCNGC	6 cut(s)	106, 140, 267, 494, 509, 848
FspBI	CTAG	2 cut(s)	210, 543
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	6 cut(s)	106, 140, 267, 494, 509, 848
GsuI	CTGGAG	1 cut(s)	604
HaeIII	GGCC	4 cut(s)	139, 224, 324, 614
HapII	CCGG	2 cut(s)	424, 836
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HinfI	GANTC	6 cut(s)	655, 674, 680, 701, 910, 937
HpaII	CCGG	2 cut(s)	424, 836
Hpy188I	TCNGA	5 cut(s)	82, 607, 634, 679, 706
Hpy188III	TCNNGA	7 cut(s)	111, 182, 516, 640, 652, 836, 914
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	188, 463
HpyCH4III	ACNGT	2 cut(s)	299, 788
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	8, 461, 511, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 272, 538
HpyF3I	CTNAG	4 cut(s)	45, 109, 260, 923
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	1 cut(s)	850
Kpn2I	TCCGGA	1 cut(s)	835
Kzo9I	GATC	2 cut(s)	118, 350
LmnI	GCTCC	4 cut(s)	113, 490, 798, 838
Lsp1109I	GCAGC	5 cut(s)	92, 278, 495, 505, 834
LweI	GCATC	2 cut(s)	519, 536
MaeI	CTAG	2 cut(s)	210, 543
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	120, 352
MboI	GATC	2 cut(s)	118, 350
MboII	GAAGA	7 cut(s)	323, 479, 538, 655, 710, 764, 839
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	3 cut(s)	249, 326, 714
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	5 cut(s)	150, 855, 865, 930, 942
MluNI	TGGCCA	1 cut(s)	614
MnlI	CCTC	9 cut(s)	6, 40, 45, 378, 547, 589, 806, 823, 918
Mox20I	TGGCCA	1 cut(s)	614
MroI	TCCGGA	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	2 cut(s)	369, 474
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	2 cut(s)	496, 624
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	424, 836
MspR9I	CCNGG	3 cut(s)	128, 327, 425
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	2 cut(s)	16, 137
MvaI	CCWGG	2 cut(s)	128, 327
MwoI	GCNNNNNNNGC	3 cut(s)	132, 272, 538
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	2 cut(s)	118, 350
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	2 cut(s)	324, 834
NmuCI	GTSAC	1 cut(s)	163
PctI	GAATGC	2 cut(s)	16, 137
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	6 cut(s)	655, 674, 680, 701, 910, 937
PkrI	GCNGC	6 cut(s)	107, 141, 268, 495, 510, 849
PshBI	ATTAAT	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	126, 325
PspGI	CCWGG	2 cut(s)	126, 325
PspN4I	GGNNCC	2 cut(s)	324, 834
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	322, 323
PstNI	CAGNNNCTG	1 cut(s)	116
PvuII	CAGCTG	2 cut(s)	496, 624
RsaI	GTAC	2 cut(s)	669, 785
RsaNI	GTAC	2 cut(s)	668, 784
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	369, 474
SatI	GCNGC	6 cut(s)	106, 140, 267, 494, 509, 848
Sau3AI	GATC	2 cut(s)	118, 350
Sau96I	GGNCC	2 cut(s)	322, 323
ScrFI	CCNGG	3 cut(s)	128, 327, 425
SduI	GDGCHC	3 cut(s)	249, 326, 714
SfaNI	GCATC	2 cut(s)	519, 536
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	368, 878
SmoI	CTYRAG	2 cut(s)	368, 878
Sse9I	AATT	5 cut(s)	150, 855, 865, 930, 942
SsiI	CCGC	1 cut(s)	140
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	210, 543
StyD4I	CCNGG	3 cut(s)	126, 325, 423
StyI	CCWWGG	2 cut(s)	190, 209
TaaI	ACNGT	2 cut(s)	299, 788
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	181, 940
TasI	AATT	5 cut(s)	150, 855, 865, 930, 942
TatI	WGTACW	2 cut(s)	667, 783
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	6 cut(s)	655, 674, 680, 701, 910, 937
Tru1I	TTAA	2 cut(s)	369, 474
Tru9I	TTAA	2 cut(s)	369, 474
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	5 cut(s)	105, 266, 493, 508, 847
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	226, 270, 323
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	855
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	210, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.