Rh5BG469500

Belongs to the eukaryotic-type primase small subunit family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
74771682 .. 74807847
36166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG469500.1

Sequence Viewer

Length: 1323 bp
ATGCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTGCTACCCTGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACAATGATGTTAGATACTGCTGCTCAGGAGCTGATCTGTGCCTGGAATGCTGGCCGCTTATGACAATTGCTATCAAAGTGACTGACACTGCCCTTCGAGATGACCTTGGTTTCAATCACATTCCTAGGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTCGGCAACGAAAACAGTCATAAAAAGTTTTCTTTGATGGGCCCTGGTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATCGTTTTCCAGTCAAAAGATATTTTATACTCTCCGGGGAAAGTGGCAAGATAATAGACGAACCTTCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAAGATGCAAGGACTGCCTAGATGCGTGGAGGAGATTGTGTTCTCTTATACCTACCCAAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCATCATTCTGTGTATATCCAAAGACGGGTCGTGTTTGTGTTCCGATTGATAATTTGATATCACCCGTTGCGAGGAGTTTGATCCTACTGCAGTTCCAACCCTTTCCGCTGAATGTGATGAGCTTCTCTCGGACTCGTTTCCATACAGAGAGATCCACAATGGAGTATTGTGGGAAGTTGACGGAAAGGTATGTGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATCGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTTGATGATCAAACTGTTAAGGTGGTGGACATTGTTGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTACATCAAATTGCTGACCCCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAGTTGCCCAAACTGAGACAACTATGTAGTCCCCAGCCCAAATGGTCCCATAATTTCCGCGCAAAAAGCAAACCGTTTGAATTTCATACCAAATCCCAAATCATAGCTACAAAATCCTCCCAATTCCAGTTCCCATCGCCCCAAATTCGAACACATCCTTCATCTTCGTCTTCAGTGATATTCAATTCAGCCACAAGGCAACAGAAACAGATCATATAG

Protein Analysis

440

Amino Acids

50.76

Weight (kDa)

8.91

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_primase_S PF01896 22 - 226 4.5e-27 DNA primase small subunit
TCTP PF00838 275 - 369 1e-22 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022774)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0068871
rosa_samantha Rh5AG451100 Rh5BG469500 Rh5CG491900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 1164
AciI CCGC 3 cut(s) 140, 734, 1162
AclWI GGATC 2 cut(s) 703, 774
AcoI YGGCCR 2 cut(s) 137, 222
AcsI RAATTY 2 cut(s) 1184, 1248
AcuI CTGAAG 4 cut(s) 381, 894, 932, 1260
AfaI GTAC 1 cut(s) 1001
AfiI CCNNNNNNNGG 2 cut(s) 653, 699
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 6 cut(s) 199, 457, 603, 833, 1184, 1288
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 126, 325
AleI CACNNNNGTG 1 cut(s) 989
AloI GAACNNNNNNTCC 2 cut(s) 548, 580
AluBI AGCT 7 cut(s) 116, 269, 496, 750, 1024, 1093, 1211
AluI AGCT 7 cut(s) 116, 269, 496, 750, 1024, 1093, 1211
Alw26I GTCTC 2 cut(s) 1037, 1114
AlwI GGATC 2 cut(s) 703, 774
AlwNI CAGNNNCTG 2 cut(s) 116, 887
AoxI GGCC 3 cut(s) 137, 222, 322
ApaI GGGCCC 1 cut(s) 326
ApeKI GCWGC 4 cut(s) 105, 266, 493, 508
ApoI RAATTY 2 cut(s) 1184, 1248
AseI ATTAAT 1 cut(s) 474
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 1166
AspS9I GGNCC 3 cut(s) 322, 323, 1149
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 681, 1003
AsuII TTCGAA 1 cut(s) 1252
AvaII GGWCC 1 cut(s) 1149
AvrII CCTAGG 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 249, 326
BbsI GAAGAC 3 cut(s) 323, 474, 1266
BbvI GCAGC 4 cut(s) 92, 278, 495, 505
BccI CCATC 2 cut(s) 313, 1246
BciT130I CCWGG 2 cut(s) 128, 327
BclI TGATCA 1 cut(s) 904
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 1037, 1114
BfaI CTAG 2 cut(s) 210, 543
BfmI CTRYAG 1 cut(s) 716
BfrI CTTAAG 1 cut(s) 368
BisI GCNGC 5 cut(s) 106, 140, 267, 494, 509
BlnI CCTAGG 1 cut(s) 209
BlsI GCNGC 5 cut(s) 107, 141, 268, 495, 510
Bme1390I CCNGG 3 cut(s) 128, 327, 425
Bme18I GGWCC 1 cut(s) 1149
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 322, 323, 1149
BmiI GGNNCC 2 cut(s) 324, 1151
BmrFI CCNGG 3 cut(s) 128, 327, 425
BmsI GCATC 5 cut(s) 519, 536, 638, 874, 1045
BpiI GAAGAC 3 cut(s) 323, 474, 1266
BplI GAGNNNNNCTC 2 cut(s) 739, 771
BpmI CTGGAG 1 cut(s) 1088
Bpu10I CCTNAGC 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 1252
BpuEI CTTGAG 1 cut(s) 1046
BpuMI CCSGG 1 cut(s) 425
BsaJI CCNNGG 4 cut(s) 190, 209, 325, 424
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 699
Bse1I ACTGG 3 cut(s) 399, 1105, 1231
Bse21I CCTNAGG 1 cut(s) 45
BseBI CCWGG 2 cut(s) 128, 327
BseDI CCNNGG 4 cut(s) 190, 209, 325, 424
BseGI GGATG 2 cut(s) 334, 1258
BseLI CCNNNNNNNGG 2 cut(s) 653, 699
BseMII CTCAG 5 cut(s) 36, 123, 251, 1108, 1109
BseNI ACTGG 3 cut(s) 399, 1105, 1231
BseRI GAGGAG 3 cut(s) 62, 569, 715
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 4 cut(s) 92, 278, 495, 505
BseYI CCCAGC 1 cut(s) 1137
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 1 cut(s) 1164
BshFI GGCC 3 cut(s) 139, 224, 324
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 2 cut(s) 1119, 1135
BslI CCNNNNNNNGG 2 cut(s) 653, 699
BsmAI GTCTC 2 cut(s) 1037, 1114
BsmFI GGGAC 2 cut(s) 1119, 1135
BsmI GAATGC 2 cut(s) 16, 137
BsnI GGCC 3 cut(s) 139, 224, 324
Bsp119I TTCGAA 1 cut(s) 1252
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 249, 326
Bsp143I GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
BspACI CCGC 3 cut(s) 140, 734, 1162
BspANI GGCC 3 cut(s) 139, 224, 324
BspCNI CTCAG 5 cut(s) 37, 122, 252, 1107, 1110
BspFNI CGCG 1 cut(s) 1164
BspLI GGNNCC 2 cut(s) 324, 1151
BspMAI CTGCAG 1 cut(s) 720
BspPI GGATC 2 cut(s) 703, 774
BspT104I TTCGAA 1 cut(s) 1252
BspTI CTTAAG 1 cut(s) 368
BsrI ACTGG 3 cut(s) 399, 1105, 1231
BssECI CCNNGG 4 cut(s) 190, 209, 325, 424
BssMI GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
BssT1I CCWWGG 2 cut(s) 190, 209
Bst2UI CCWGG 2 cut(s) 128, 327
Bst4CI ACNGT 3 cut(s) 299, 913, 1179
Bst6I CTCTTC 1 cut(s) 989
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 2 cut(s) 272, 538
BstBI TTCGAA 1 cut(s) 1252
BstC8I GCNNGC 2 cut(s) 6, 137
BstDEI CTNAG 5 cut(s) 45, 109, 260, 1094, 1118
BstF5I GGATG 2 cut(s) 334, 1258
BstFNI CGCG 1 cut(s) 1164
BstHHI GCGC 1 cut(s) 1166
BstKTI GATC 6 cut(s) 121, 353, 711, 782, 907, 1317
BstMAI GTCTC 2 cut(s) 1037, 1114
BstMBI GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
BstMWI GCNNNNNNNGC 6 cut(s) 132, 272, 538, 878, 1090, 1170
BstNI CCWGG 2 cut(s) 128, 327
BstSCI CCNGG 3 cut(s) 126, 325, 423
BstSFI CTRYAG 1 cut(s) 716
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 1 cut(s) 1164
BstV1I GCAGC 4 cut(s) 92, 278, 495, 505
BstV2I GAAGAC 3 cut(s) 323, 474, 1266
BstX2I RGATCY 1 cut(s) 779
BstYI RGATCY 1 cut(s) 779
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 3 cut(s) 139, 224, 324
BtgZI GCGATG 1 cut(s) 1224
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 2 cut(s) 334, 1258
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 3 cut(s) 171, 1102, 1284
Cac8I GCNNGC 2 cut(s) 6, 137
CaiI CAGNNNCTG 2 cut(s) 116, 887
CfoI GCGC 1 cut(s) 1166
Cfr13I GGNCC 3 cut(s) 322, 323, 1149
Csp6I GTAC 1 cut(s) 1000
CviAII CATG 2 cut(s) 592, 987
CviQI GTAC 1 cut(s) 1000
DdeI CTNAG 5 cut(s) 45, 109, 260, 1094, 1118
DpnI GATC 6 cut(s) 120, 352, 710, 781, 906, 1316
DpnII GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
EaeI YGGCCR 2 cut(s) 137, 222
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
Eco130I CCWWGG 2 cut(s) 190, 209
Eco24I GRGCYC 2 cut(s) 249, 326
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 1149
Eco57I CTGAAG 4 cut(s) 381, 894, 932, 1260
Eco81I CCTNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 126, 325
EcoRV GATATC 1 cut(s) 687
EcoT14I CCWWGG 2 cut(s) 190, 209
EcoT38I GRGCYC 2 cut(s) 249, 326
ErhI CCWWGG 2 cut(s) 190, 209
FaeI CATG 2 cut(s) 595, 990
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 1119, 1135
FatI CATG 2 cut(s) 591, 986
FauNDI CATATG 1 cut(s) 609
FbaI TGATCA 1 cut(s) 904
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 5 cut(s) 106, 140, 267, 494, 509
FokI GGATG 2 cut(s) 321, 1245
FriOI GRGCYC 2 cut(s) 249, 326
Fsp4HI GCNGC 5 cut(s) 106, 140, 267, 494, 509
FspBI CTAG 2 cut(s) 210, 543
GlaI GCGC 1 cut(s) 1165
GluI GCNGC 5 cut(s) 106, 140, 267, 494, 509
GsaI CCCAGC 1 cut(s) 1141
GsuI CTGGAG 1 cut(s) 1088
HaeIII GGCC 3 cut(s) 139, 224, 324
HapII CCGG 1 cut(s) 424
HhaI GCGC 1 cut(s) 1166
Hin1II CATG 2 cut(s) 595, 990
Hin6I GCGC 1 cut(s) 1164
HinP1I GCGC 1 cut(s) 1164
HincII GTYRAC 2 cut(s) 807, 934
HindII GTYRAC 2 cut(s) 807, 934
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 1 cut(s) 760
HpaII CCGG 1 cut(s) 424
HphI GGTGA 2 cut(s) 681, 1003
Hpy166II GTNNAC 4 cut(s) 807, 850, 925, 934
Hpy188I TCNGA 4 cut(s) 82, 672, 759, 944
Hpy188III TCNNGA 5 cut(s) 111, 182, 516, 950, 1040
Hpy8I GTNNAC 4 cut(s) 807, 850, 925, 934
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 5 cut(s) 188, 463, 869, 876, 1272
HpyCH4III ACNGT 3 cut(s) 299, 913, 1179
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 7 cut(s) 8, 461, 511, 532, 718, 860, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 272, 538, 878, 1090, 1170
HpyF3I CTNAG 5 cut(s) 45, 109, 260, 1094, 1118
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 2 cut(s) 595, 990
HspAI GCGC 1 cut(s) 1164
Ksp22I TGATCA 1 cut(s) 904
Kzo9I GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
LmnI GCTCC 5 cut(s) 113, 490, 836, 952, 1067
Lsp1109I GCAGC 4 cut(s) 92, 278, 495, 505
LweI GCATC 5 cut(s) 519, 536, 638, 874, 1045
MaeI CTAG 2 cut(s) 210, 543
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 163, 982, 1097
MalI GATC 6 cut(s) 120, 352, 710, 781, 906, 1316
MboI GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
MboII GAAGA 7 cut(s) 323, 479, 538, 1006, 1066, 1260, 1266
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 779
MhlI GDGCHC 2 cut(s) 249, 326
MluCI AATT 8 cut(s) 150, 679, 1007, 1156, 1184, 1226, 1248, 1288
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 748
MseI TTAA 5 cut(s) 369, 474, 623, 915, 1050
MslI CAYNNNNRTG 2 cut(s) 21, 989
MspA1I CMGCKG 2 cut(s) 496, 736
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 3 cut(s) 128, 327, 425
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 16, 137
MvaI CCWGG 2 cut(s) 128, 327
MvnI CGCG 1 cut(s) 1164
MwoI GCNNNNNNNGC 6 cut(s) 132, 272, 538, 878, 1090, 1170
NciI CCSGG 1 cut(s) 425
NdeI CATATG 1 cut(s) 609
NdeII GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
NlaIII CATG 2 cut(s) 595, 990
NlaIV GGNNCC 2 cut(s) 324, 1151
NmuCI GTSAC 3 cut(s) 163, 982, 1097
NspV TTCGAA 1 cut(s) 1252
OliI CACNNNNGTG 1 cut(s) 989
PctI GAATGC 2 cut(s) 16, 137
PkrI GCNGC 5 cut(s) 107, 141, 268, 495, 510
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 126, 325
PspFI CCCAGC 1 cut(s) 1137
PspGI CCWGG 2 cut(s) 126, 325
PspN4I GGNNCC 2 cut(s) 324, 1151
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 3 cut(s) 322, 323, 1149
PstI CTGCAG 1 cut(s) 720
PstNI CAGNNNCTG 2 cut(s) 116, 887
PsuI RGATCY 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 1001
RsaNI GTAC 1 cut(s) 1000
RseI CAYNNNNRTG 2 cut(s) 21, 989
SaqAI TTAA 5 cut(s) 369, 474, 623, 915, 1050
SatI GCNGC 5 cut(s) 106, 140, 267, 494, 509
Sau3AI GATC 6 cut(s) 118, 350, 708, 779, 904, 1314
Sau96I GGNCC 3 cut(s) 322, 323, 1149
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 3 cut(s) 128, 327, 425
SduI GDGCHC 2 cut(s) 249, 326
SfaNI GCATC 5 cut(s) 519, 536, 638, 874, 1045
SfcI CTRYAG 1 cut(s) 716
SfuI TTCGAA 1 cut(s) 1252
SinI GGWCC 1 cut(s) 1149
SmiMI CAYNNNNRTG 2 cut(s) 21, 989
SmlI CTYRAG 2 cut(s) 368, 1025
SmoI CTYRAG 2 cut(s) 368, 1025
Sse9I AATT 8 cut(s) 150, 679, 1007, 1156, 1184, 1226, 1248, 1288
SsiI CCGC 3 cut(s) 140, 734, 1162
SspI AATATT 1 cut(s) 478
SspMI CTAG 2 cut(s) 210, 543
StyD4I CCNGG 3 cut(s) 126, 325, 423
StyI CCWWGG 2 cut(s) 190, 209
TaaI ACNGT 3 cut(s) 299, 913, 1179
TaiI ACGT 1 cut(s) 231
TaqI TCGA 2 cut(s) 181, 1252
TasI AATT 8 cut(s) 150, 679, 1007, 1156, 1184, 1226, 1248, 1288
TauI GCSGC 1 cut(s) 142
Tru1I TTAA 5 cut(s) 369, 474, 623, 915, 1050
Tru9I TTAA 5 cut(s) 369, 474, 623, 915, 1050
TscAI CASTG 3 cut(s) 178, 1102, 1284
TseFI GTSAC 3 cut(s) 163, 982, 1097
TseI GCWGC 4 cut(s) 105, 266, 493, 508
Tsp45I GTSAC 3 cut(s) 163, 982, 1097
TspDTI ATGAA 6 cut(s) 226, 270, 323, 626, 1178, 1254
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 3 cut(s) 178, 1102, 1284
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 1149
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 2 cut(s) 1184, 1248
XmaJI CCTAGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 2 cut(s) 210, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.