Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0022774

Physical Location & Seq

Genomic Coordinates Forward (+)

77331227 .. 77340824

Gene Structure 9598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG451100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGACCCTCTCGCCGGTGCCGTGAAATTCCCAGATCTCAAAAGGTCGCGCAATTGAGCCTCTCGATTTCTGTTGATGTTAATTTTGATTCTATGGCTCCAATAGATACTCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTGCTACCCTGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACAATGATGTTAAATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAATGCTGGCCGCTTATGACAATTGCTATCAAAGTGACTGACACTGCCCTTCGAGATGACCTTGGTTTCAATCACATTCCTAGGTATATAGTGGCCAACGTGGTGTTCATTGTTGGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGTGGGCAACGAAAACAGTCATAAAAAGTTTTCTTTGATGGGCCCTGCTCTTCATTCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATCGCTTTCCAGTCACAAGATATTTTATACTCTCCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAAGATGCAAGGACTGCCTAGATGCGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTGCACGATAACCCCCCGCTTTGTTTTACTGTCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

253

Amino Acids

29.17

Weight (kDa)

8.36

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	58 - 243	3.4e-18	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022774)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068871
rosa_samantha	Rh5AG451100 Rh5BG469500 Rh5CG491900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	50
AciI	CCGC	2 cut(s)	248, 739
AcoI	YGGCCR	2 cut(s)	245, 330
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AloI	GAACNNNNNNTCC	2 cut(s)	671, 703
AluBI	AGCT	3 cut(s)	224, 377, 619
AluI	AGCT	3 cut(s)	224, 377, 619
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	245, 330, 445
ApaI	GGGCCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	213, 374, 616, 631
ApoI	RAATTY	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	597
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	5, 445, 446
AsuC2I	CCSGG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	5
AvrII	CCTAGG	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	2 cut(s)	357, 449
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	200, 386, 618, 628
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	548
BfaI	CTAG	3 cut(s)	318, 666, 705
BfrI	CTTAAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	5 cut(s)	214, 248, 375, 617, 632
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	5 cut(s)	215, 249, 376, 618, 633
Bme1390I	CCNGG	2 cut(s)	236, 548
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	3 cut(s)	5, 445, 446
BmiI	GGNNCC	5 cut(s)	6, 7, 20, 99, 447
BmrFI	CCNGG	2 cut(s)	236, 548
BmsI	GCATC	2 cut(s)	642, 659
BpiI	GAAGAC	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	298, 317, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	213, 243, 671, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	522
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	298, 317, 547
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	144, 231, 359
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	2 cut(s)	170, 692
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	4 cut(s)	200, 386, 618, 628
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	247, 332, 447
BshNI	GGYRCC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	16, 547
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	2 cut(s)	124, 245
BsnI	GGCC	3 cut(s)	247, 332, 447
Bsp120I	GGGCCC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	357, 449
Bsp143I	GATC	2 cut(s)	35, 473
BspACI	CCGC	2 cut(s)	248, 739
BspANI	GGCC	3 cut(s)	247, 332, 447
BspCNI	CTCAG	3 cut(s)	145, 230, 360
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	5 cut(s)	6, 7, 20, 99, 447
BspQI	GCTCTTC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	18
BspTI	CTTAAG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	298, 317, 547
BssMI	GATC	2 cut(s)	35, 473
BssT1I	CCWWGG	2 cut(s)	298, 317
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	422, 753
Bst6I	CTCTTC	1 cut(s)	459
BstAFI	CTTAAG	1 cut(s)	491
BstAPI	GCANNNNNTGC	2 cut(s)	380, 661
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	4 cut(s)	153, 217, 368, 759
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	38, 476
BstMBI	GATC	2 cut(s)	35, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 380, 661
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	234, 546
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	4 cut(s)	200, 386, 618, 628
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	247, 332, 447
BtgZI	GCGATG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	3 cut(s)	5, 445, 446
CviAII	CATG	1 cut(s)	715
CviJI	RGCY	9 cut(s)	60, 98, 224, 247, 332, 355, 377, 447, 619
CviKI_1	RGCY	9 cut(s)	60, 98, 224, 247, 332, 355, 377, 447, 619
DdeI	CTNAG	4 cut(s)	153, 217, 368, 759
DpnI	GATC	2 cut(s)	37, 475
DpnII	GATC	2 cut(s)	35, 473
EaeI	YGGCCR	2 cut(s)	245, 330
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	298, 317
Eco24I	GRGCYC	2 cut(s)	357, 449
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	153
EcoO109I	RGGNCCY	2 cut(s)	5, 446
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	298, 317
EcoT38I	GRGCYC	2 cut(s)	357, 449
ErhI	CCWWGG	2 cut(s)	298, 317
FaeI	CATG	1 cut(s)	718
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	714
FauI	CCCGC	1 cut(s)	746
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	214, 248, 375, 617, 632
FriOI	GRGCYC	2 cut(s)	357, 449
Fsp4HI	GCNGC	5 cut(s)	214, 248, 375, 617, 632
FspBI	CTAG	3 cut(s)	318, 666, 705
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	5 cut(s)	214, 248, 375, 617, 632
HaeIII	GGCC	3 cut(s)	247, 332, 447
HapII	CCGG	2 cut(s)	16, 547
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	718
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	16, 547
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	4 cut(s)	64, 219, 290, 639
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	422, 753
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	5 cut(s)	116, 584, 634, 655, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 380, 661
HpyF3I	CTNAG	4 cut(s)	153, 217, 368, 759
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	718
HspAI	GCGC	1 cut(s)	50
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	35, 473
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	3 cut(s)	103, 221, 613
Lsp1109I	GCAGC	4 cut(s)	200, 386, 618, 628
LweI	GCATC	2 cut(s)	642, 659
MaeI	CTAG	3 cut(s)	318, 666, 705
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	271, 524
MalI	GATC	2 cut(s)	37, 475
MboI	GATC	2 cut(s)	35, 473
MboII	GAAGA	3 cut(s)	446, 602, 661
MfeI	CAATTG	2 cut(s)	53, 258
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	357, 449
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	4 cut(s)	27, 53, 82, 258
MluNI	TGGCCA	1 cut(s)	332
MnlI	CCTC	9 cut(s)	19, 71, 114, 148, 153, 501, 586, 670, 712
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	4 cut(s)	81, 204, 492, 597
MslI	CAYNNNNRTG	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	619
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	2 cut(s)	16, 547
MspR9I	CCNGG	2 cut(s)	236, 548
MunI	CAATTG	2 cut(s)	53, 258
Mva1269I	GAATGC	2 cut(s)	124, 245
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	240, 380, 661
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	35, 473
NlaIII	CATG	1 cut(s)	718
NlaIV	GGNNCC	5 cut(s)	6, 7, 20, 99, 447
NmuCI	GTSAC	2 cut(s)	271, 524
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PctI	GAATGC	2 cut(s)	124, 245
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	215, 249, 376, 618, 633
PpuMI	RGGWCCY	1 cut(s)	5
PshBI	ATTAAT	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	5 cut(s)	6, 7, 20, 99, 447
PspOMI	GGGCCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	5, 445, 446
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	81, 204, 492, 597
SatI	GCNGC	5 cut(s)	214, 248, 375, 617, 632
Sau3AI	GATC	2 cut(s)	35, 473
Sau96I	GGNCC	3 cut(s)	5, 445, 446
ScrFI	CCNGG	2 cut(s)	236, 548
SduI	GDGCHC	2 cut(s)	357, 449
SfaNI	GCATC	2 cut(s)	642, 659
SgrAI	CRCCGGYG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	27, 53, 82, 258
SsiI	CCGC	2 cut(s)	248, 739
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	3 cut(s)	318, 666, 705
StyD4I	CCNGG	2 cut(s)	234, 546
StyI	CCWWGG	2 cut(s)	298, 317
TaaI	ACNGT	2 cut(s)	422, 753
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	65, 289
TasI	AATT	4 cut(s)	27, 53, 82, 258
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	81, 204, 492, 597
Tru9I	TTAA	4 cut(s)	81, 204, 492, 597
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	271, 524
TseI	GCWGC	4 cut(s)	213, 374, 616, 631
Tsp45I	GTSAC	2 cut(s)	271, 524
TspDTI	ATGAA	4 cut(s)	334, 378, 446, 450
TspRI	CASTG	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	27
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	3 cut(s)	318, 666, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.