RchiOBHm_Chr5g0081031

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022771
Physical Location & Seq
Reverse (-)
87059813 .. 87060401
589 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGGTGCTTCTGAGTTTTCAAGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGACCAATCTTCAAAACCCATGATTTCGTTGCCTCAAGAATCCAATCAGACCAGAAATGAGTCATCTTTTCCTGAGGGTTCTAATGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGATTGTCTGGGTTTGAGTTGATGAATGGTTGTGATTTGTTTAATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGAGTCATGTCCTTACATTGATGAGTCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATTCGCTTATAGTTCAAGTTCCAAAGAAGCATAGAATCTCATTTCCTGTTCAACTTCTCTTTGTTATAGTTGGTTTTCATACATGGAAATTTGTTTGTTTTCTGTTAGTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

164

Amino Acids

18.56

Weight (kDa)

6.11

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 127 7.4e-24 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022771)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081031
rosa_roxburghii Rroxscaffold_1G00002420
rosa_samantha Rh5CG572400 Rh5CG572700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 467
AfaI GTAC 2 cut(s) 46, 58
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 6 cut(s) 21, 72, 178, 313, 395, 431
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 22, 240, 354
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 123, 273
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 341
BsnI GGCC 1 cut(s) 334
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 4, 124, 274
BsrDI GCAATG 1 cut(s) 196
BstDEI CTNAG 3 cut(s) 12, 132, 282
BstV1I GCAGC 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 45, 57
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 3 cut(s) 79, 288, 462
CviJI RGCY 2 cut(s) 165, 334
CviKI_1 RGCY 2 cut(s) 165, 334
CviQI GTAC 2 cut(s) 45, 57
DdeI CTNAG 3 cut(s) 12, 132, 282
Eco147I AGGCCT 1 cut(s) 334
Eco81I CCTNAGG 1 cut(s) 132
FaeI CATG 3 cut(s) 82, 291, 465
FatI CATG 3 cut(s) 78, 287, 461
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 334
Hin1II CATG 3 cut(s) 82, 291, 465
HinfI GANTC 6 cut(s) 98, 119, 260, 284, 305, 414
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 13, 39, 108
Hpy188III TCNNGA 2 cut(s) 95, 131
HpyCH4V TGCA 1 cut(s) 378
HpyF3I CTNAG 3 cut(s) 12, 132, 282
Hsp92II CATG 3 cut(s) 82, 291, 465
LpnPI CCDG 5 cut(s) 124, 144, 189, 348, 438
Lsp1109I GCAGC 1 cut(s) 265
MboII GAAGA 3 cut(s) 37, 60, 255
MfeI CAATTG 1 cut(s) 313
MluCI AATT 3 cut(s) 313, 379, 467
MlyI GAGTC 3 cut(s) 128, 293, 314
MnlI CCTC 3 cut(s) 102, 127, 187
MseI TTAA 1 cut(s) 237
MunI CAATTG 1 cut(s) 313
NlaIII CATG 3 cut(s) 82, 291, 465
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 3 cut(s) 98, 260, 414
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 3 cut(s) 127, 292, 313
PpsI GAGTC 3 cut(s) 127, 292, 313
RsaI GTAC 2 cut(s) 46, 58
RsaNI GTAC 2 cut(s) 45, 57
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 279
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 3 cut(s) 128, 293, 314
SetI ASST 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 3 cut(s) 313, 379, 467
SseBI AGGCCT 1 cut(s) 334
StuI AGGCCT 1 cut(s) 334
TasI AATT 3 cut(s) 313, 379, 467
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 3 cut(s) 98, 260, 414
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 4 cut(s) 233, 252, 363, 446
XapI RAATTY 1 cut(s) 467
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.