Rh5CG572400

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022771
Physical Location & Seq
Reverse (-)
81018670 .. 81020158
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG572400.1

Sequence Viewer

Length: 519 bp
ATGGGTGCTTCTGAGTTTTCAAGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGACCAATCTTCAAAACCCATGATTTCGTTGCCTCAAGAATCCAATCAGACCAGAAATGAGTCATCTTTTCCTGAGGGTTCTAATGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGATTGTCTGGGTTTGAGTTGATGAATGGTTGTGATTTGTTTAATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGAGTCATGTCCTTACATTGATGAGTCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATTCGCTTATAGTTCAAGATAACAATTATTCAGTGGAGTTTGTTCAATCACCATTTCTAGTTCCAGAATCGGAGGTGCTAACCATAAATGGGTCAAAGAAGGAAACACCGCCTGGATATGGTTCAGAGATCCTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

172

Amino Acids

19.09

Weight (kDa)

4.5

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 127 8.2e-24 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022771)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081031
rosa_roxburghii Rroxscaffold_1G00002420
rosa_samantha Rh5CG572400 Rh5CG572700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 488
AclWI GGATC 1 cut(s) 502
AfaI GTAC 2 cut(s) 46, 58
AfiI CCNNNNNNNGG 3 cut(s) 341, 468, 497
AgsI TTSAA 6 cut(s) 21, 72, 178, 313, 395, 425
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AlwI GGATC 1 cut(s) 502
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 262, 420
AxyI CCTNAGG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 22, 240, 354
BciT130I CCWGG 1 cut(s) 492
BfaI CTAG 1 cut(s) 437
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 468, 497
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 511
BseLI CCNNNNNNNGG 3 cut(s) 341, 468, 497
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 123, 273
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 334
BslI CCNNNNNNNGG 3 cut(s) 341, 468, 497
BsnI GGCC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 507
BspACI CCGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 4, 124, 274
BspPI GGATC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 492
BstDEI CTNAG 3 cut(s) 12, 132, 282
BstKTI GATC 1 cut(s) 510
BstMBI GATC 1 cut(s) 507
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 417
Csp6I GTAC 2 cut(s) 45, 57
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 2 cut(s) 79, 288
CviJI RGCY 2 cut(s) 165, 334
CviKI_1 RGCY 2 cut(s) 165, 334
CviQI GTAC 2 cut(s) 45, 57
DdeI CTNAG 3 cut(s) 12, 132, 282
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 511
Eco147I AGGCCT 1 cut(s) 334
Eco81I CCTNAGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 2 cut(s) 82, 291
FatI CATG 2 cut(s) 78, 287
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 437
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 334
Hin1II CATG 2 cut(s) 82, 291
HinfI GANTC 6 cut(s) 98, 119, 260, 284, 305, 446
HphI GGTGA 2 cut(s) 262, 420
Hpy188I TCNGA 5 cut(s) 13, 39, 108, 451, 505
Hpy188III TCNNGA 4 cut(s) 95, 131, 395, 443
HpyAV CCTTC 1 cut(s) 472
HpyCH4V TGCA 1 cut(s) 378
HpyF3I CTNAG 3 cut(s) 12, 132, 282
Hsp92II CATG 2 cut(s) 82, 291
Kzo9I GATC 1 cut(s) 507
LpnPI CCDG 7 cut(s) 124, 144, 189, 348, 456, 477, 504
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 1 cut(s) 437
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 3 cut(s) 37, 60, 255
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 507
MluCI AATT 3 cut(s) 313, 379, 403
MlyI GAGTC 3 cut(s) 128, 293, 314
MnlI CCTC 4 cut(s) 102, 127, 187, 445
MseI TTAA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 492
NdeII GATC 1 cut(s) 507
NlaIII CATG 2 cut(s) 82, 291
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 3 cut(s) 98, 260, 446
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 3 cut(s) 127, 292, 313
PpsI GAGTC 3 cut(s) 127, 292, 313
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 2 cut(s) 46, 58
RsaNI GTAC 2 cut(s) 45, 57
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 507
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 3 cut(s) 128, 293, 314
ScrFI CCNGG 1 cut(s) 492
SetI ASST 2 cut(s) 167, 456
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 3 cut(s) 313, 379, 403
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 488
SspMI CTAG 1 cut(s) 437
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 511
TasI AATT 3 cut(s) 313, 379, 403
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 3 cut(s) 98, 260, 446
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 417
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 233, 252, 363
TspRI CASTG 1 cut(s) 417
XspI CTAG 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.