Rroxscaffold_1G00002420

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0022771
Physical Location & Seq
Forward (+)
2897228 .. 2899043
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002420.1

Sequence Viewer

Length: 351 bp
ATGGGTAGTGATCAATCTTCAAAACCCATGATTTCTTTGCCCCAAGAATCCAATCACACCAGAAATGAGTTATCTTTTTCTGAGGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAGTGAGGGATTGTCTGGGTTTGAGTTAATGAATGGTTGTGATTTGTTTGATGGAAGATGGGCGAGAGATGAGTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCCTTCAATTATTTTCTCAATAGTAGGCTTGATAATGGCTATGAAAAGTATAGATGGCAACCCAAAAACTGCCATCTCCCAAGGTTATTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

116

Amino Acids

13.1

Weight (kDa)

4.9

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 58 - 110 3.6e-20 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022771)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081031
rosa_roxburghii Rroxscaffold_1G00002420
rosa_samantha Rh5CG572400 Rh5CG572700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 21, 127, 262
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 214
BccI CCATC 4 cut(s) 182, 189, 303, 336
BclI TGATCA 1 cut(s) 10
BfaI CTAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 1 cut(s) 28
CviJI RGCY 3 cut(s) 114, 283, 294
CviKI_1 RGCY 3 cut(s) 114, 283, 294
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 31
FaiI YATR 7 cut(s) 29, 117, 134, 214, 225, 297, 306
FatI CATG 1 cut(s) 27
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 31
HinfI GANTC 3 cut(s) 47, 209, 254
Hpy188I TCNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 73, 138, 216
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 1 cut(s) 90
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 9, 204
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 2 cut(s) 76, 136
MseI TTAA 1 cut(s) 164
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 31
PfeI GAWTC 2 cut(s) 47, 254
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 10
SchI GAGTC 1 cut(s) 218
SetI ASST 2 cut(s) 116, 341
Sse9I AATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 335
TasI AATT 1 cut(s) 262
TfiI GAWTC 2 cut(s) 47, 254
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 182, 267, 312
TspRI CASTG 1 cut(s) 145
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.