Rh5CG572700

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022771
Physical Location & Seq
Reverse (-)
81031370 .. 81031729
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG572700.1

Sequence Viewer

Length: 360 bp
ATGGGTGCTTCTCAGTTTTCCGGGAAGATGGGAGATCAGAGCAGAACTCAAATAGGTACCGATCAATCTTCAAAACCCATGATTTCTTTTCCCCAAGAACCCAATCAGACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGGTTGTCTGGGTTTGAGTTGATTAATGGTTGTGATTTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

119

Amino Acids

13.0

Weight (kDa)

4.38

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 118 6.3e-17 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022771)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081031
rosa_roxburghii Rroxscaffold_1G00002420
rosa_samantha Rh5CG572400 Rh5CG572700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 3 cut(s) 72, 178, 313
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 278
AseI ATTAAT 1 cut(s) 219
Asp718I GGTACC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 262
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 22, 233, 240
BcnI CCSGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 141
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuMI CCSGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 341
BsnI GGCC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 34, 61
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 196
BssMI GATC 2 cut(s) 34, 61
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 2 cut(s) 37, 64
BstMBI GATC 2 cut(s) 34, 61
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 57
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 1 cut(s) 79
CviJI RGCY 2 cut(s) 165, 334
CviKI_1 RGCY 2 cut(s) 165, 334
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 36, 63
DpnII GATC 2 cut(s) 34, 61
Eco147I AGGCCT 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 153
FaeI CATG 1 cut(s) 82
FaiI YATR 7 cut(s) 80, 168, 185, 265, 276, 348, 358
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 279
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 82
HinfI GANTC 3 cut(s) 119, 260, 305
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 39, 108, 133
HpyAV CCTTC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 82
KpnI GGTACC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 34, 61
LpnPI CCDG 5 cut(s) 34, 124, 189, 267, 348
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 36, 63
MboI GATC 2 cut(s) 34, 61
MboII GAAGA 4 cut(s) 37, 60, 114, 255
MfeI CAATTG 1 cut(s) 313
MluCI AATT 1 cut(s) 313
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 1 cut(s) 187
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 313
NciI CCSGG 1 cut(s) 22
NdeII GATC 2 cut(s) 34, 61
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 58
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 2 cut(s) 260, 305
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 34, 61
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 22
SetI ASST 3 cut(s) 58, 139, 167
Sse9I AATT 1 cut(s) 313
SseBI AGGCCT 1 cut(s) 334
SspMI CTAG 1 cut(s) 141
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 20
TasI AATT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 260, 305
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 252, 318
VspI ATTAAT 1 cut(s) 219
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.