Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021411

Physical Location & Seq

Genomic Coordinates Reverse (-)

6358807 .. 6359945

Gene Structure 1139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTCTTCAGAGCCGAAGATCAAAGCCAGCTACAGCTCGTTAAACGCCAAGACATCGACGACGAAGACGACCTCTTCGAAGTGATCGATAAGCTGATTGCTCAGGGAATCAATGCCGGAGATGTTAAGAAGCTTCAGGAGGCAGGGATCTACACTTGCAATGGTTTGATGATGCACACCAAGAAGAACTTGACGGGAATTAAAGGTTTATCTGAGGCCAAAGTTGATAAGATTTGTGAAGCTGCTGAGAAGATAGTGAACTTTGGATATAGTAATGGGAGTGATGCTCTAACCAGAAGGAAGTCTGTGATTCGCATTACGACTGAGAGCCAAGCACTTGATGAACTATTAGGCGGTGGGATTGAAACTCGAGCAATCACAGAAGCCTTTGGGGAATTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

134

Amino Acids

14.81

Weight (kDa)

4.96

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	99 - 134	1.2e-10	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0391091
rosa_roxburghii	Rroxscaffold_3G00231280 Rroxscaffold_4G00314160 Rroxscaffold_5G00337620 Rroxscaffold_7G00196130

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	5 cut(s)	31, 37, 94, 133, 242
AluI	AGCT	5 cut(s)	31, 37, 94, 133, 242
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	162, 274
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	116, 204, 237, 315
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	117
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	19, 84, 147
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	4 cut(s)	115, 205, 238, 316
BspDI	ATCGAT	1 cut(s)	87
BspPI	GGATC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	166
BssMI	GATC	3 cut(s)	19, 84, 147
Bst6I	CTCTTC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	102, 213, 246, 324
BstKTI	GATC	3 cut(s)	22, 87, 150
BstMBI	GATC	3 cut(s)	19, 84, 147
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	87
DdeI	CTNAG	4 cut(s)	102, 213, 246, 324
DpnI	GATC	3 cut(s)	21, 86, 149
DpnII	GATC	3 cut(s)	19, 84, 147
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	369
FaiI	YATR	1 cut(s)	270
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	108, 310
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	11, 214
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	159, 175
HpyF3I	CTNAG	4 cut(s)	102, 213, 246, 324
Kzo9I	GATC	3 cut(s)	19, 84, 147
LpnPI	CCDG	6 cut(s)	41, 89, 122, 129, 130, 307
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	162, 274
MalI	GATC	3 cut(s)	21, 86, 149
MboI	GATC	3 cut(s)	19, 84, 147
MboII	GAAGA	5 cut(s)	29, 67, 77, 196, 262
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	2 cut(s)	198, 395
MnlI	CCTC	3 cut(s)	83, 133, 208
MseI	TTAA	3 cut(s)	42, 126, 201
MspI	CCGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	19, 84, 147
NspV	TTCGAA	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 75, 84
PfeI	GAWTC	2 cut(s)	108, 310
PkrI	GCNGC	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	42, 126, 201
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	19, 84, 147
SetI	ASST	8 cut(s)	33, 39, 75, 96, 135, 208, 244, 404
SfaNI	GCATC	2 cut(s)	162, 274
SfcI	CTRYAG	1 cut(s)	32
Sfr274I	CTCGAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	198, 395
SsiI	CCGC	1 cut(s)	354
TaqI	TCGA	4 cut(s)	57, 78, 87, 370
TasI	AATT	2 cut(s)	198, 395
TfiI	GAWTC	2 cut(s)	108, 310
Tru1I	TTAA	3 cut(s)	42, 126, 201
Tru9I	TTAA	3 cut(s)	42, 126, 201
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	357
XapI	RAATTY	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.