Rroxscaffold_4G00314160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021411
Physical Location & Seq
Forward (+)
38086161 .. 38086820
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314160.1

Sequence Viewer

Length: 393 bp
ATGGCCAAGGTGGAACTTCGAACTGGTAACACGGTCCTCCGGCACAGCTGCGTTGACTTCGGCGCCTCCCTCTCGCCGCTGCTCCGCTTCGCCAAGTCGCCGGTGCCAATGAAAGAACGAACCGCACGAAGCTGCTCTTGTTTGCTTCCCGGAGTTCCGGGACTTAGGCCGAGAGATCGCCATAGTAAAGGCTATGGTCTTCTCATCCAGAATTCATATTTCGCAAGAACCGGTGATTTCTCGGGGAATCAATGTCGGAGATGTTTAGAAGCTTCGGGACGCAGGATCTACACCTGCAATGGCTTGACGATGCACACCAAGAATAACTTGACCGGAATGGTTTATCCGAGGTCAAAGTCGATAAGATTTGTGAAGCTGCCGAGAAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.6

Weight (kDa)

10.91

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021411)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0391091
rosa_roxburghii Rroxscaffold_3G00231280 Rroxscaffold_4G00314160 Rroxscaffold_5G00337620 Rroxscaffold_7G00196130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 302
AccB1I GGYRCC 2 cut(s) 62, 103
AciI CCGC 3 cut(s) 77, 85, 123
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 63
AgeI ACCGGT 1 cut(s) 230
AluBI AGCT 4 cut(s) 48, 132, 272, 376
AluI AGCT 4 cut(s) 48, 132, 272, 376
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 2 cut(s) 3, 167
ApeKI GCWGC 4 cut(s) 48, 79, 132, 376
ApoI RAATTY 1 cut(s) 211
AsiGI ACCGGT 1 cut(s) 230
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 2 cut(s) 150, 159
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 62, 103
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 4 cut(s) 35, 66, 119, 363
BcnI CCSGG 2 cut(s) 150, 159
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 302
BisI GCNGC 5 cut(s) 49, 77, 80, 133, 377
BlsI GCNGC 5 cut(s) 50, 78, 81, 134, 378
Bme1390I CCNGG 2 cut(s) 150, 159
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 64, 105
BmrFI CCNGG 2 cut(s) 150, 159
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 150, 159
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 6, 347
BsaWI WCCGGW 2 cut(s) 230, 332
Bse118I RCCGGY 2 cut(s) 100, 230
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 6, 347
BseGI GGATG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 35, 66, 119, 363
BshFI GGCC 2 cut(s) 5, 169
BshNI GGYRCC 2 cut(s) 62, 103
BshTI ACCGGT 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 6 cut(s) 40, 101, 150, 158, 231, 333
BslFI GGGAC 2 cut(s) 174, 291
BsmFI GGGAC 2 cut(s) 174, 291
BsnI GGCC 2 cut(s) 5, 169
BsoBI CYCGRG 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 19
Bsp143I GATC 2 cut(s) 175, 285
BspACI CCGC 3 cut(s) 77, 85, 123
BspANI GGCC 2 cut(s) 5, 169
BspLI GGNNCC 2 cut(s) 64, 105
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 2 cut(s) 62, 103
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 100, 230
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 2 cut(s) 100, 230
BssECI CCNNGG 2 cut(s) 6, 347
BssMI GATC 2 cut(s) 175, 285
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 178, 288
BstMBI GATC 2 cut(s) 175, 285
BstSCI CCNGG 2 cut(s) 148, 157
BstV1I GCAGC 4 cut(s) 35, 66, 119, 363
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 2 cut(s) 5, 169
BtsCI GGATG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 302
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 2 cut(s) 100, 230
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 230
CviJI RGCY 8 cut(s) 5, 48, 132, 169, 192, 272, 303, 376
CviKI_1 RGCY 8 cut(s) 5, 48, 132, 169, 192, 272, 303, 376
DdeI CTNAG 1 cut(s) 164
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 177, 287
DpnII GATC 2 cut(s) 175, 285
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 6
FaiI YATR 3 cut(s) 183, 195, 217
FalI AAGNNNNNCTT 4 cut(s) 121, 153, 311, 343
FaqI GGGAC 2 cut(s) 174, 291
Fnu4HI GCNGC 5 cut(s) 49, 77, 80, 133, 377
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 5 cut(s) 49, 77, 80, 133, 377
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 49, 77, 80, 133, 377
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 5, 169
HapII CCGG 6 cut(s) 40, 101, 150, 158, 231, 333
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 1 cut(s) 247
HpaII CCGG 6 cut(s) 40, 101, 150, 158, 231, 333
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 258, 348
Hpy188III TCNNGA 2 cut(s) 208, 276
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 297, 313
HpyF3I CTNAG 1 cut(s) 164
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 175, 285
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 4 cut(s) 35, 66, 119, 363
LweI GCATC 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 26
MalI GATC 2 cut(s) 177, 287
MboI GATC 2 cut(s) 175, 285
MboII GAAGA 1 cut(s) 191
MflI RGATCY 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 47, 76, 80, 342
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 48, 79
MspI CCGG 6 cut(s) 40, 101, 150, 158, 231, 333
MspR9I CCNGG 2 cut(s) 150, 159
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 2 cut(s) 150, 159
NdeII GATC 2 cut(s) 175, 285
NlaIV GGNNCC 2 cut(s) 64, 105
NmeAIII GCCGAG 1 cut(s) 195
NspV TTCGAA 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 2 cut(s) 148, 157
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 5 cut(s) 50, 78, 81, 134, 378
PluTI GGCGCC 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 64, 105
PspPI GGNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 48
SatI GCNGC 5 cut(s) 49, 77, 80, 133, 377
Sau3AI GATC 2 cut(s) 175, 285
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 150, 159
SetI ASST 7 cut(s) 12, 50, 134, 274, 296, 353, 378
SfaNI GCATC 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 100
SinI GGWCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 211
SsiI CCGC 3 cut(s) 77, 85, 123
SspDI GGCGCC 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 148, 157
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 19, 359
TasI AATT 1 cut(s) 211
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 247
TseI GCWGC 4 cut(s) 48, 79, 132, 376
TspDTI ATGAA 2 cut(s) 125, 204
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.