Rroxscaffold_3G00231280

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0021411
Physical Location & Seq
Reverse (-)
16416262 .. 16416552
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231280.1

Sequence Viewer

Length: 291 bp
ATGGCCAAGGTGGAACTTCGAATCGGTGACACAAGCCTCAAGCCCAGCTGCGTTGACTTCGGCGCCTCCTCTCGCCGCTGCTCCGCTTCGCCAAGTCGCGGTGTCGATGAAAGAGCGAACCCGTACGAAGCTGCTCTTGTTTGCTTCCCGGAGCTCCGGGACTTGGGCCGGGAGATCGCCATGAAGCTTCTCGAGTCGTGTAGGAAGGTGCTCGGATCTTCCGGGTTTTGGTTCAAGGACGATGGGGCCGCAGTGGTCTCGGTGAAGAGCAAGGGGTTTATGCTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

96

Amino Acids

10.36

Weight (kDa)

8.8

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021411)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0391091
rosa_roxburghii Rroxscaffold_3G00231280 Rroxscaffold_4G00314160 Rroxscaffold_5G00337620 Rroxscaffold_7G00196130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 76, 84, 99, 249
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 98, 163, 228
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 4 cut(s) 48, 131, 154, 187
AluI AGCT 4 cut(s) 48, 131, 154, 187
Alw21I GWGCWC 2 cut(s) 156, 213
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 3, 166, 246
ApeKI GCWGC 3 cut(s) 48, 78, 131
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 166, 246
AsuC2I CCSGG 4 cut(s) 149, 158, 170, 223
AsuHPI GGTGA 2 cut(s) 38, 274
AsuII TTCGAA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 156, 213
BbvI GCAGC 3 cut(s) 35, 65, 118
BccI CCATC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BcnI CCSGG 4 cut(s) 149, 158, 170, 223
BcoDI GTCTC 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 5 cut(s) 49, 76, 79, 132, 249
BlsI GCNGC 5 cut(s) 50, 77, 80, 133, 250
Bme1390I CCNGG 4 cut(s) 149, 158, 170, 223
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 166, 246
BmiI GGNNCC 2 cut(s) 64, 247
BmrFI CCNGG 4 cut(s) 149, 158, 170, 223
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 4 cut(s) 149, 158, 170, 223
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 163, 228
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 3 cut(s) 98, 163, 228
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 3 cut(s) 35, 65, 118
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 5, 168, 248
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 156, 213
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 149, 157, 169, 222
BsiWI CGTACG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 98, 163, 228
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 3 cut(s) 5, 168, 248
Bso31I GGTCTC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 156, 213
Bsp143I GATC 2 cut(s) 174, 215
BspACI CCGC 4 cut(s) 76, 84, 99, 249
BspANI GGCC 3 cut(s) 5, 168, 248
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 64, 247
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 260
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 174, 215
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 19
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 177, 218
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 174, 215
BstSCI CCNGG 4 cut(s) 147, 156, 168, 221
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 35, 65, 118
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 3 cut(s) 5, 168, 248
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 166, 246
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 181
CviJI RGCY 9 cut(s) 5, 36, 43, 48, 131, 154, 168, 187, 248
CviKI_1 RGCY 9 cut(s) 5, 36, 43, 48, 131, 154, 168, 187, 248
CviQI GTAC 1 cut(s) 124
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 176, 217
DpnII GATC 2 cut(s) 174, 215
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 182, 281
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 5 cut(s) 49, 76, 79, 132, 249
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 49, 76, 79, 132, 249
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 49, 76, 79, 132, 249
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 3 cut(s) 5, 168, 248
HapII CCGG 4 cut(s) 149, 157, 169, 222
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 21, 194
HpaII CCGG 4 cut(s) 149, 157, 169, 222
HphI GGTGA 2 cut(s) 38, 274
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 174, 215
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 3 cut(s) 86, 151, 159
LpnPI CCDG 5 cut(s) 58, 162, 170, 182, 235
Lsp1109I GCAGC 3 cut(s) 35, 65, 118
MaeIII GTNAC 1 cut(s) 26
MalI GATC 2 cut(s) 176, 217
MboI GATC 2 cut(s) 174, 215
MboII GAAGA 2 cut(s) 210, 277
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 2 cut(s) 156, 213
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 47, 76, 79
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 48, 78
MspI CCGG 4 cut(s) 149, 157, 169, 222
MspR9I CCNGG 4 cut(s) 149, 158, 170, 223
MvnI CGCG 1 cut(s) 99
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 4 cut(s) 149, 158, 170, 223
NdeII GATC 2 cut(s) 174, 215
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 64, 247
NmuCI GTSAC 1 cut(s) 26
NspV TTCGAA 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 21
Pfl23II CGTACG 1 cut(s) 123
PfoI TCCNGGA 2 cut(s) 147, 156
PkrI GCNGC 5 cut(s) 50, 77, 80, 133, 250
PleI GAGTC 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 44
PspLI CGTACG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 64, 247
PspPI GGNCC 2 cut(s) 166, 246
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 48
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 260
SatI GCNGC 5 cut(s) 49, 76, 79, 132, 249
Sau3AI GATC 2 cut(s) 174, 215
Sau96I GGNCC 2 cut(s) 166, 246
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 4 cut(s) 149, 158, 170, 223
SduI GDGCHC 2 cut(s) 156, 213
SetI ASST 6 cut(s) 12, 50, 133, 156, 189, 210
SfoI GGCGCC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 38, 191
SmoI CTYRAG 2 cut(s) 38, 191
SsiI CCGC 4 cut(s) 76, 84, 99, 249
SspDI GGCGCC 1 cut(s) 62
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 4 cut(s) 147, 156, 168, 221
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 3 cut(s) 19, 105, 192
TauI GCSGC 2 cut(s) 78, 251
TfiI GAWTC 1 cut(s) 21
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 48, 78, 131
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 123, 197
TspRI CASTG 1 cut(s) 258
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.