Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0021411

Physical Location & Seq

Genomic Coordinates Forward (+)

5801897 .. 5803040

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTCTTCAGAGCCGAAGATCAAAGCCAGCTACAGCTTGTCAAACGCCAAGACATCGACGACGAAGACGACCTCTTCGAAGTGATCGATAAGCGTAAGCTTCACGACCTTCGCTCCTATTCAATTTCCAATTTCCTGATTGCTCAGGGAATCAATGCCGGAGATGTTAAGAAGCTTCAGGACGCAGGGATCTACACTTGCAATGGTTTGATGATGCACACCAAGAAGAACTTGACTGGAATTAAAGGCTTATCTGAGGCCAAAGTTGATAAGATTTGTGAAGCTGCTGAGAAGATAGTGGTGGGATTGAAACTCGAGCAATCACAGAAGCCTTTGGGGAATTTAGGTGAGCACTGGTGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

5.9

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021411)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0391091
rosa_roxburghii	Rroxscaffold_3G00231280 Rroxscaffold_4G00314160 Rroxscaffold_5G00337620 Rroxscaffold_7G00196130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	123, 310
AluBI	AGCT	5 cut(s)	31, 37, 100, 175, 284
AluI	AGCT	5 cut(s)	31, 37, 100, 175, 284
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuHPI	GGTGA	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse1I	ACTGG	2 cut(s)	241, 359
Bse3DI	GCAATG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	3 cut(s)	158, 246, 279
BseNI	ACTGG	2 cut(s)	241, 359
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	19, 84, 189
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	3 cut(s)	157, 247, 280
BspDI	ATCGAT	1 cut(s)	87
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	241, 359
BssMI	GATC	3 cut(s)	19, 84, 189
Bst6I	CTCTTC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	144, 255, 288
BstKTI	GATC	3 cut(s)	22, 87, 192
BstMBI	GATC	3 cut(s)	19, 84, 189
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	144, 255, 288
DpnI	GATC	3 cut(s)	21, 86, 191
DpnII	GATC	3 cut(s)	19, 84, 189
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	314
FaiI	YATR	1 cut(s)	364
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
Fnu4HI	GCNGC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	191
HindIII	AAGCTT	2 cut(s)	98, 173
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	11, 256
Hpy188III	TCNNGA	3 cut(s)	104, 136, 179
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	201, 217
HpyF3I	CTNAG	3 cut(s)	144, 255, 288
Kzo9I	GATC	3 cut(s)	19, 84, 189
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	41, 131, 149, 164, 171, 172, 222, 340
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	204
MalI	GATC	3 cut(s)	21, 86, 191
MboI	GATC	3 cut(s)	19, 84, 189
MboII	GAAGA	5 cut(s)	29, 67, 77, 238, 304
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	4 cut(s)	123, 130, 240, 340
MnlI	CCTC	2 cut(s)	83, 250
MseI	TTAA	2 cut(s)	168, 243
MspI	CCGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	19, 84, 189
NspV	TTCGAA	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 75, 84
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	168, 243
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	19, 84, 189
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	8 cut(s)	33, 39, 75, 102, 111, 177, 286, 349
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	32
Sfr274I	CTCGAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	123, 130, 240, 340
TaqI	TCGA	4 cut(s)	57, 78, 87, 315
TasI	AATT	4 cut(s)	123, 130, 240, 340
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	168, 243
Tru9I	TTAA	2 cut(s)	168, 243
TscAI	CASTG	1 cut(s)	359
TseI	GCWGC	1 cut(s)	284
TspRI	CASTG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.