Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019921

Physical Location & Seq

Genomic Coordinates Forward (+)

18414250 .. 18415168

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAACACGTGAAGGAAAAGGAGGAGAAAGAAGATAAAAGGTGTAAACGTCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATCAAGGTGCAGCAGGAGATAACTCCATCTTCTAAATGGGAGGACTGTAAATCACTTCATGAAGTTAGTTCAGAGTACAGTGCTATTGGTGAAGAGAGCTCCTGCAAGGAGATAATCGATAAACACATAATGCAATTGAAAGAACAAGCAAACGAGAAAGAGAGAAAGCGGAAGGAAGAGAATGTACTATTTCAGCTGAATGACATTAGTAGCTTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

101

Amino Acids

11.88

Weight (kDa)

5.42

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FF	PF01846	20 - 70	2.6e-06	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019921)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400681
rosa_multiflora	Rmu_co8438781.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127980
rosa_rugosa	Rorug07G0255200
rosa_samantha	Rh4DG184900 Rh6AG228600 Rh7CG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AcvI	CACGTG	1 cut(s)	10
AfaI	GTAC	2 cut(s)	161, 270
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	3 cut(s)	183, 280, 297
AluI	AGCT	3 cut(s)	183, 280, 297
Alw21I	GWGCWC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbrPI	CACGTG	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	131, 164
Bst6I	CTCTTC	2 cut(s)	171, 255
BstBAI	YACGTR	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	169
CciI	TCATGA	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	160, 269
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	3 cut(s)	183, 280, 297
CviKI_1	RGCY	3 cut(s)	183, 280, 297
CviQI	GTAC	2 cut(s)	160, 269
Eam1104I	CTCTTC	2 cut(s)	171, 255
EarI	CTCTTC	2 cut(s)	171, 255
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	144, 212
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	7, 250
HpyCH4III	ACNGT	2 cut(s)	131, 164
HpyCH4IV	ACGT	2 cut(s)	9, 49
HpyCH4V	TGCA	4 cut(s)	56, 94, 189, 217
HpySE526I	ACGT	2 cut(s)	9, 49
Hsp92II	CATG	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	2 cut(s)	83, 199
Lsp1109I	GCAGC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	9, 49
MboII	GAAGA	5 cut(s)	44, 72, 105, 188, 272
MfeI	CAATTG	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	2 cut(s)	16, 118
MspA1I	CMGCKG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	218
NlaIII	CATG	1 cut(s)	146
PagI	TCATGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	96
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	185
PspCI	CACGTG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	161, 270
RsaNI	GTAC	2 cut(s)	160, 269
SacI	GAGCTC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	7 cut(s)	12, 44, 52, 93, 185, 282, 299
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	253
SstI	GAGCTC	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	131, 164
TaiI	ACGT	2 cut(s)	12, 52
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	218
TatI	WGTACW	2 cut(s)	159, 268
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	59, 131, 159
TspRI	CASTG	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.