Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019921

Physical Location & Seq

Genomic Coordinates Forward (+)

36664797 .. 36668824

Gene Structure 4028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAACACATGAAGGAAAAGGAGGAGAAAGAAGCTAAAAGGTGTAAACGTCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATCAAGGTGCAGCAGGAGATAACTCCATCTTCTAAATGGGAGGACTGTAAATCACTTCATGAAGTTAGTTCAAAGTACAGTGCTATTGGTGAAGAGAGCTCCTGCAAGGAGATAATCGATAAACACATAATGCAATTGAAAGAAGAAGCAAACGAGAAAGAGAGAAAGCGGAAGGAAGAGAAGGCATCAGCAGCAATGTGCGTCAGAATAGGCAGCTTCTCTGACCCTATGGAAGCACAGGGGCCTGCACACTTTCTTGAACAAATTCTCTTCATGGGGAGTACAAAGTTTCTGGTTGAAAATGAGATTTTGCAAATAATAGGTTCGAGGGCTCAGGATAAGAATGGATATGGTACAAAATCAAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

152

Amino Acids

17.4

Weight (kDa)

6.54

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	82 - 135	1e-08	Insulinase (Peptidase family M16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0019921)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400681
rosa_multiflora	Rmu_co8438781.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127980
rosa_rugosa	Rorug07G0255200
rosa_samantha	Rh4DG184900 Rh6AG228600 Rh7CG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	348, 448
AfaI	GTAC	3 cut(s)	161, 367, 439
AgsI	TTSAA	5 cut(s)	156, 223, 344, 383, 453
AluBI	AGCT	3 cut(s)	35, 183, 300
AluI	AGCT	3 cut(s)	35, 183, 300
Alw21I	GWGCWC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	94, 275, 297
ApoI	RAATTY	2 cut(s)	348, 448
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	185, 418
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	106, 287, 309
BccI	CCATC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	95, 276, 298
BlsI	GCNGC	3 cut(s)	96, 277, 299
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	106, 287, 309
BsgI	GTGCAG	2 cut(s)	113, 315
BshFI	GGCC	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	185, 418
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	131, 164
Bst6I	CTCTTC	3 cut(s)	171, 255, 359
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	106, 287, 309
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	328
BsuTUI	ATCGAT	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	160, 366, 438
CviAII	CATG	3 cut(s)	10, 143, 358
CviJI	RGCY	5 cut(s)	35, 183, 300, 328, 416
CviKI_1	RGCY	5 cut(s)	35, 183, 300, 328, 416
CviQI	GTAC	3 cut(s)	160, 366, 438
DdeI	CTNAG	1 cut(s)	417
Eam1104I	CTCTTC	3 cut(s)	171, 255, 359
EarI	CTCTTC	3 cut(s)	171, 255, 359
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	185, 418
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	185, 418
FaeI	CATG	3 cut(s)	13, 146, 361
FaiI	YATR	6 cut(s)	11, 144, 212, 314, 359, 435
FatI	CATG	3 cut(s)	9, 142, 357
Fnu4HI	GCNGC	3 cut(s)	95, 276, 298
FriOI	GRGCYC	2 cut(s)	185, 418
Fsp4HI	GCNGC	3 cut(s)	95, 276, 298
GluI	GCNGC	3 cut(s)	95, 276, 298
HaeIII	GGCC	1 cut(s)	328
HgaI	GACGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	13, 146, 361
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	290, 307
Hpy188III	TCNNGA	3 cut(s)	143, 341, 419
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	7, 250, 259
HpyCH4III	ACNGT	2 cut(s)	131, 164
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	56, 94, 189, 217, 332, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	3 cut(s)	13, 146, 361
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	6 cut(s)	83, 199, 308, 342, 362, 404
Lsp1109I	GCAGC	3 cut(s)	106, 287, 309
LweI	GCATC	1 cut(s)	278
MaeII	ACGT	1 cut(s)	49
MboII	GAAGA	6 cut(s)	72, 105, 188, 239, 272, 346
MfeI	CAATTG	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	185, 418
MluCI	AATT	3 cut(s)	218, 348, 448
MnlI	CCTC	3 cut(s)	16, 118, 405
MroXI	GAANNNNTTC	1 cut(s)	348
MunI	CAATTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	13, 146, 361
NlaIV	GGNNCC	1 cut(s)	327
PagI	TCATGA	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	96, 277, 299
Psp124BI	GAGCTC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	326
RsaI	GTAC	3 cut(s)	161, 367, 439
RsaNI	GTAC	3 cut(s)	160, 366, 438
SacI	GAGCTC	1 cut(s)	185
SatI	GCNGC	3 cut(s)	95, 276, 298
Sau96I	GGNCC	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	185, 418
SetI	ASST	7 cut(s)	37, 44, 52, 93, 185, 302, 409
SfaNI	GCATC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	218, 348, 448
SsiI	CCGC	1 cut(s)	253
SstI	GAGCTC	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	131, 164
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	201, 410
TasI	AATT	3 cut(s)	218, 348, 448
TatI	WGTACW	2 cut(s)	159, 365
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	3 cut(s)	94, 275, 297
TspDTI	ATGAA	5 cut(s)	26, 59, 131, 159, 346
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	348, 448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.