Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019921

Physical Location & Seq

Genomic Coordinates Forward (+)

41215766 .. 41217360

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAATGCGTGAAGGAAAATGAGGAGAAAGAAGCTAAAAGGTGTAAAAGTCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATCAAGGTGCAGCAGGCTGTGTGCCAACATAAGATTATGCTTGTGAATGGAGCTTGGGAACAGTGTGTGTCTGCTTTGGAGCCACAAGTCAAGAACAAGCTGTCAAAATATCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

67

Amino Acids

7.71

Weight (kDa)

7.67

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019921)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400681
rosa_multiflora	Rmu_co8438781.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127980
rosa_rugosa	Rorug07G0255200
rosa_samantha	Rh4DG184900 Rh6AG228600 Rh7CG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	35, 137, 184
AluI	AGCT	3 cut(s)	35, 137, 184
ApeKI	GCWGC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	99
CviJI	RGCY	5 cut(s)	35, 101, 137, 166, 184
CviKI_1	RGCY	5 cut(s)	35, 101, 137, 166, 184
FaiI	YATR	2 cut(s)	114, 122
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	56, 94
LmnI	GCTCC	2 cut(s)	134, 163
LpnPI	CCDG	1 cut(s)	83
Lsp1109I	GCAGC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	72
MnlI	CCTC	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	165
PctI	GAATGC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	95
SetI	ASST	5 cut(s)	37, 44, 93, 139, 186
SgeI	CNNG	9 cut(s)	22, 65, 100, 110, 137, 150, 182, 187, 193
TaaI	ACNGT	1 cut(s)	147
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.