Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438781.1

Orthogroup ID

OG0019921

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 916

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

ctgagtgcttcgctagggcagttgccatatggcaaggaaagagaaattctgttgaaagcactagtatttgaggagctaatggaacacatgaaggaaaaggaggagaaagaagctaaaacgtgtaaacgtcttgcagatgatttctttcatctcttatcttctatcaaggtgcagcaggagataacttcatcttctaaatgggaggactgtaaatcactttatgaagttagttcaaagtacagtgctattggtgaagagagctcctgcaaggagataatcgataaacacataatgcaattgaaagaacaagcaaatgagaaagagagaaagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

111

Amino Acids

12.94

Weight (kDa)

5.99

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019921)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400681
rosa_multiflora	Rmu_co8438781.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127980
rosa_rugosa	Rorug07G0255200
rosa_samantha	Rh4DG184900 Rh6AG228600 Rh7CG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	55, 234, 301
AhlI	ACTAGT	1 cut(s)	61
AluBI	AGCT	3 cut(s)	76, 113, 261
AluI	AGCT	3 cut(s)	76, 113, 261
Alw21I	GWGCWC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	2 cut(s)	14, 62
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	86, 116
BseXI	GCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	209, 242
Bst6I	CTCTTC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	2
BstV1I	GCAGC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	76, 113, 261
CviKI_1	RGCY	3 cut(s)	76, 113, 261
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	2
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	263
FaeI	CATG	1 cut(s)	91
FaiI	YATR	5 cut(s)	28, 30, 89, 222, 290
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	14, 62
GluI	GCNGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	209, 242
HpyCH4IV	ACGT	2 cut(s)	119, 127
HpyCH4V	TGCA	4 cut(s)	134, 172, 267, 295
HpyF3I	CTNAG	1 cut(s)	2
HpySE526I	ACGT	2 cut(s)	119, 127
Hsp92II	CATG	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	73, 266
LpnPI	CCDG	2 cut(s)	161, 277
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	14, 62
MaeII	ACGT	2 cut(s)	119, 127
MboII	GAAGA	3 cut(s)	150, 183, 266
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	2 cut(s)	45, 296
MnlI	CCTC	3 cut(s)	64, 94, 196
MunI	CAATTG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	28
NlaIII	CATG	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	263
SatI	GCNGC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	78, 115, 122, 130, 171, 263
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	2 cut(s)	45, 296
SspMI	CTAG	2 cut(s)	14, 62
SstI	GAGCTC	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	209, 242
TaiI	ACGT	2 cut(s)	122, 130
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	45, 296
TatI	WGTACW	1 cut(s)	237
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	104, 137, 177, 237
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	45
XspI	CTAG	2 cut(s)	14, 62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.