RchiOBHm_Chr4g0411291

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0021407
Physical Location & Seq
Reverse (-)
35040809 .. 35041030
222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGGCGTCTTCTTCTTCCTACTGCACCCGCTGGCATGCCATACTCTACTCCACCATGGCTGTCATCCTCGCCGCCATCGCAATCTCAATGACCCTCCGCACCGACCCCACCGCCCAAACCCCTAAATCCACCGCACCCATCAGCCACGTCATCTCTCTCAGCGCCTCAGGAACTCTCCAGGCCTCCGGCTTCACCGTCACGGCGACACTCAACCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

73

Amino Acids

7.62

Weight (kDa)

9.19

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411291
rosa_laevigata RLG00000003131
rosa_roxburghii Rroxscaffold_4G00293070
rosa_samantha Rh3CG243000 Rh4DG161400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 28, 72, 97, 111, 132
AcyI GRCGYC 1 cut(s) 5
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 177
AoxI GGCC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 166
BccI CCATC 2 cut(s) 83, 146
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 179
BfaI CTAG 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 54
Bse21I CCTNAGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 172, 180
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 186
BsnI GGCC 1 cut(s) 182
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 5 cut(s) 28, 72, 97, 111, 132
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 171, 179
BssECI CCNNGG 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 32, 36
BstDEI CTNAG 2 cut(s) 158, 166
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 32, 36
CfoI GCGC 1 cut(s) 164
CviAII CATG 2 cut(s) 35, 55
CviJI RGCY 4 cut(s) 59, 144, 182, 189
CviKI_1 RGCY 4 cut(s) 59, 144, 182, 189
DdeI CTNAG 2 cut(s) 158, 166
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 182
Eco81I CCTNAGG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 38, 58
FaiI YATR 3 cut(s) 36, 41, 56
FatI CATG 2 cut(s) 34, 54
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 220
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 38, 58
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 158, 166
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 38, 58
HspAI GCGC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 16, 153, 164, 191, 199
MaeI CTAG 1 cut(s) 220
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 2 cut(s) 3, 6
MnlI CCTC 4 cut(s) 77, 104, 175, 193
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 38, 58
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PceI AGGCCT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
SatI GCNGC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 179
SetI ASST 1 cut(s) 150
SphI GCATGC 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 5 cut(s) 28, 72, 97, 111, 132
SspMI CTAG 1 cut(s) 220
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 150
TauI GCSGC 1 cut(s) 74
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
XceI RCATGY 1 cut(s) 38
XspI CTAG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.