Rroxscaffold_4G00293070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021407
Physical Location & Seq
Forward (+)
13326532 .. 13336494
9963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293070.1

Sequence Viewer

Length: 462 bp
ATGCCTCTGTCATCATCGAGGTGGCCTTCGCCGAAGCGAATTGCCGACGATCCGCTCCATTATCATGAACCAAGGCCAATGACTCGGCGAATTTCCGAATTGCTGCGTGAACTTGTCCATGTACGCATCGAGAAGGCAAGCGATTGCGCGGTCGCTCCACTCCTCGCGATCCTTCCGTACTCTCCGGAGGCCACGGCGAGAGGATTTCGATCTCCCGATGATGGTGTACGAACCTCCTCCTCCTTCTTCACCACCACCGTCGCCGCCGGCTCCGTCGCTAAGCTCATCGGATTGGTCCTTTATCTTCGACGCGACATCGTTCGATCCATGCGTACGTCAAAGGGTTATTTTTTCGCTATGCTTCCATGGCGTCAAGTTGGCGGCGGGACGACGAGGGAGGCTACGCAAGTTGGCGAGAGAAGAGAGAGAGAGAGAGAGGGAAGCAAAAATAATAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.26

Weight (kDa)

10.42

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411291
rosa_laevigata RLG00000003131
rosa_roxburghii Rroxscaffold_4G00293070
rosa_samantha Rh3CG243000 Rh4DG161400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 55
AccII CGCG 3 cut(s) 149, 167, 312
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 5 cut(s) 53, 149, 264, 381, 384
AclWI GGATC 3 cut(s) 44, 163, 318
AcsI RAATTY 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 4 cut(s) 123, 179, 228, 334
AfiI CCNNNNNNNGG 1 cut(s) 221
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
AlwI GGATC 3 cut(s) 44, 163, 318
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 3 cut(s) 23, 74, 189
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 90
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 210
BisI GCNGC 3 cut(s) 104, 264, 382
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 3 cut(s) 105, 265, 383
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 3 cut(s) 71, 192, 365
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 208
BseAI TCCGGA 1 cut(s) 184
BseDI CCNNGG 3 cut(s) 71, 192, 365
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 221
BseRI GAGGAG 3 cut(s) 152, 226, 229
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 3 cut(s) 149, 167, 312
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 25, 76, 191
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 185, 267
BsiWI CGTACG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 3 cut(s) 25, 76, 191
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 4 cut(s) 49, 168, 209, 323
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 365
Bsp68I TCGCGA 1 cut(s) 167
BspACI CCGC 5 cut(s) 53, 149, 264, 381, 384
BspANI GGCC 3 cut(s) 25, 76, 191
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 3 cut(s) 149, 167, 312
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 3 cut(s) 44, 163, 318
BsrBI CCGCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 71, 192, 365
BssMI GATC 4 cut(s) 49, 168, 209, 323
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 2 cut(s) 71, 365
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 370
BstC8I GCNNGC 2 cut(s) 139, 268
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 2 cut(s) 192, 365
BstFNI CGCG 3 cut(s) 149, 167, 312
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 4 cut(s) 52, 171, 212, 326
BstMBI GATC 4 cut(s) 49, 168, 209, 323
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstUI CGCG 3 cut(s) 149, 167, 312
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 3 cut(s) 25, 76, 191
BtgI CCRYGG 2 cut(s) 192, 365
BtuMI TCGCGA 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 139, 268
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 2 cut(s) 318, 359
Csp6I GTAC 4 cut(s) 122, 178, 227, 333
CviAII CATG 4 cut(s) 65, 119, 328, 366
CviJI RGCY 6 cut(s) 25, 76, 191, 270, 283, 401
CviKI_1 RGCY 6 cut(s) 25, 76, 191, 270, 283, 401
CviQI GTAC 4 cut(s) 122, 178, 227, 333
DdeI CTNAG 1 cut(s) 279
DpnI GATC 4 cut(s) 51, 170, 211, 325
DpnII GATC 4 cut(s) 49, 168, 209, 323
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 71, 365
Eco47I GGWCC 1 cut(s) 295
EcoT14I CCWWGG 2 cut(s) 71, 365
ErhI CCWWGG 2 cut(s) 71, 365
FaeI CATG 4 cut(s) 68, 122, 331, 369
FaiI YATR 5 cut(s) 66, 120, 329, 359, 367
FaqI GGGAC 1 cut(s) 400
FatI CATG 4 cut(s) 64, 118, 327, 365
FauI CCCGC 1 cut(s) 377
Fnu4HI GCNGC 3 cut(s) 104, 264, 382
Fsp4HI GCNGC 3 cut(s) 104, 264, 382
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 104, 264, 382
HaeIII GGCC 3 cut(s) 25, 76, 191
HapII CCGG 2 cut(s) 185, 267
HgaI GACGC 2 cut(s) 318, 359
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 4 cut(s) 68, 122, 331, 369
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 1 cut(s) 82
HpaII CCGG 2 cut(s) 185, 267
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 110, 227
Hpy188I TCNGA 2 cut(s) 97, 290
Hpy188III TCNNGA 5 cut(s) 65, 130, 166, 185, 215
Hpy8I GTNNAC 2 cut(s) 110, 227
Hpy99I CGWCG 5 cut(s) 50, 263, 278, 312, 394
HpyAV CCTTC 4 cut(s) 36, 127, 182, 253
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 4 cut(s) 68, 122, 331, 369
HspAI GCGC 1 cut(s) 147
Kpn2I TCCGGA 1 cut(s) 184
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 4 cut(s) 49, 168, 209, 323
LmnI GCTCC 3 cut(s) 60, 160, 275
LpnPI CCDG 2 cut(s) 198, 280
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 335
MalI GATC 4 cut(s) 51, 170, 211, 325
MbiI CCGCTC 1 cut(s) 55
MboI GATC 4 cut(s) 49, 168, 209, 323
MboII GAAGA 3 cut(s) 238, 296, 432
MluCI AATT 4 cut(s) 39, 90, 98, 454
MlyI GAGTC 1 cut(s) 76
MroI TCCGGA 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 1 cut(s) 460
MslI CAYNNNNRTG 2 cut(s) 19, 63
MspI CCGG 2 cut(s) 185, 267
MvnI CGCG 3 cut(s) 149, 167, 312
MwoI GCNNNNNNNGC 1 cut(s) 367
NaeI GCCGGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 365
NdeII GATC 4 cut(s) 49, 168, 209, 323
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 4 cut(s) 68, 122, 331, 369
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 64
NruI TCGCGA 1 cut(s) 167
PagI TCATGA 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PdiI GCCGGC 1 cut(s) 268
Pfl23II CGTACG 1 cut(s) 332
PkrI GCNGC 3 cut(s) 105, 265, 383
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspLI CGTACG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 295
RruI TCGCGA 1 cut(s) 167
RsaI GTAC 4 cut(s) 123, 179, 228, 334
RsaNI GTAC 4 cut(s) 122, 178, 227, 333
RseI CAYNNNNRTG 2 cut(s) 19, 63
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 3 cut(s) 104, 264, 382
Sau3AI GATC 4 cut(s) 49, 168, 209, 323
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 76
SetI ASST 4 cut(s) 23, 236, 285, 338
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 19, 63
Sse9I AATT 4 cut(s) 39, 90, 98, 454
SsiI CCGC 5 cut(s) 53, 149, 264, 381, 384
StyI CCWWGG 2 cut(s) 71, 365
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 338
TaqI TCGA 5 cut(s) 17, 129, 208, 307, 322
TasI AATT 4 cut(s) 39, 90, 98, 454
TauI GCSGC 2 cut(s) 266, 384
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 81
TspGWI ACGGA 2 cut(s) 165, 262
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.