Rh3CG243000

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
23278663 .. 23278884
222 bp
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UTR
Exon/CDS
Intron
Rh3CG243000.1

Sequence Viewer

Length: 222 bp
ATGGCGTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATACTCTACTCCACCATGGCTGTCATCCTCGCCGCCATCGCAATCTCCATGACCCTCCGCACCGACCCCACTACCCAAACCCCCAAATCCGCCACACCCATCAGCCACGTCATCTCTCTCAGCGCCTCAGGAACTCTCCGGGCCTTCGGCTTCACCGTCACGGCGACACTCATCCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

7.73

Weight (kDa)

9.78

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021407)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0411291
rosa_laevigata RLG00000003131
rosa_roxburghii Rroxscaffold_4G00293070
rosa_samantha Rh3CG243000 Rh4DG161400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 28, 72, 97, 129
AcyI GRCGYC 1 cut(s) 5
AjiI CACGTC 1 cut(s) 148
AoxI GGCC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 166
BccI CCATC 2 cut(s) 83, 146
BceAI ACGGC 1 cut(s) 216
BcnI CCSGG 1 cut(s) 179
BfaI CTAG 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 54
Bse21I CCTNAGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 63, 210
BseMII CTCAG 2 cut(s) 172, 180
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 178
BsnI GGCC 1 cut(s) 182
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 28, 72, 97, 129
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 171, 179
BssECI CCNNGG 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 32, 36
BstDEI CTNAG 2 cut(s) 158, 166
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 63, 210
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 63, 210
Cac8I GCNNGC 2 cut(s) 32, 36
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 180
CviAII CATG 2 cut(s) 55, 88
CviJI RGCY 4 cut(s) 59, 144, 182, 189
CviKI_1 RGCY 4 cut(s) 59, 144, 182, 189
DdeI CTNAG 2 cut(s) 158, 166
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 54
Eco81I CCTNAGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 58, 91
FaiI YATR 3 cut(s) 41, 56, 89
FatI CATG 2 cut(s) 54, 87
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 50, 197
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 220
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 58, 91
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 158, 166
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 58, 91
HspAI GCGC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 16, 153, 191
MaeI CTAG 1 cut(s) 220
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 2 cut(s) 3, 6
MnlI CCTC 3 cut(s) 77, 104, 175
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 58, 91
NmuCI GTSAC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PkrI GCNGC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 180
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 179
SetI ASST 1 cut(s) 150
SsiI CCGC 4 cut(s) 28, 72, 97, 129
SspMI CTAG 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 150
TauI GCSGC 1 cut(s) 74
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
XspI CTAG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.