Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0021407

Physical Location & Seq

Genomic Coordinates Reverse (-)

44689845 .. 44694855

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGTCTTCTTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATACTCTACTCCACCATGGCCATCATACTCGCCGCCATTGCAATCTCCATGACCTTCCGCTCCGACCCCACCGCCCAAACCCCCAAATCCGCCACACCCATCAACCAAAGTTGCGACCGCCAACAACAATTGCCACCTATTTCACCAAGCAACATTTACAGAAGTAAAAAACAAGAATTGGTCATCATGTGCCTCTCGAGCTTGTACCTCTTCTTTAAATTATCGACCTTGTTCTTACACTGCTCGACGCTCTTGGTTTGCCTCGGACATCTGGCTCACGATCACGGCCACCTCCTCCCAATCCTGGCCTCTCAGATTTCCCTAATTCAGCTGGGTGAACTTGTCCATGTATGCATCGAGAAGGCAAGCGATCGCGCGGTCGCTCTACTCCTCGCCATCCTTCCTGTACTCTCCGGCGGCCACGGCCAAGGATTTCGATCTCCTGATGATGGTGTACGAACCTCCTCCTCCTCCTTCGCCAACACCGCTGCTGCCGGCTCCTTTGCTGAGCTCATCGGACTAGTCCTTTATCTTCGACGCGACATCGTTCTGATCCGCGGGGCTGTTGAAGGGTTATTTTTTTTGCTATGCTTCCACGGCGTCAAGTTGGCGGTGGGACGACGAGGGAGGCTACGCGAGTTGGAGGTAGTTGGTGCTTCTTCTCTTTTCTTTGTCTACTCTTTGGATTATGGCCGTACCCAATTGACCAATGGATCTAAGGCTGCAAAGAAGGGAGGAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

264

Amino Acids

28.48

Weight (kDa)

9.37

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411291
rosa_laevigata	RLG00000003131
rosa_roxburghii	Rroxscaffold_4G00293070
rosa_samantha	Rh3CG243000 Rh4DG161400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	5 cut(s)	420, 422, 585, 603, 681
AclWI	GGATC	2 cut(s)	592, 766
AcoI	YGGCCR	5 cut(s)	63, 331, 463, 469, 736
AcyI	GRCGYC	2 cut(s)	5, 645
AfaI	GTAC	4 cut(s)	251, 453, 501, 742
AfiI	CCNNNNNNNGG	2 cut(s)	349, 494
AgsI	TTSAA	1 cut(s)	614
AhlI	ACTAGT	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	246, 376, 556
AluI	AGCT	3 cut(s)	246, 376, 556
Alw21I	GWGCWC	1 cut(s)	558
AlwI	GGATC	2 cut(s)	592, 766
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	6 cut(s)	63, 331, 351, 463, 469, 736
ApeKI	GCWGC	3 cut(s)	533, 536, 767
AsiSI	GCGATCGC	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	180, 392
AvaI	CYCGRG	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	520, 523, 754
BccI	CCATC	4 cut(s)	74, 152, 449, 488
BceAI	ACGGC	4 cut(s)	346, 484, 658, 723
BciT130I	CCWGG	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	565
BfaI	CTAG	1 cut(s)	566
BisI	GCNGC	5 cut(s)	78, 463, 534, 537, 768
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	79, 464, 535, 538, 769
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaBI	GATNNNNATC	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	5, 645
BsaJI	CCNNGG	6 cut(s)	60, 307, 466, 472, 601, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 494
Bse118I	RCCGGY	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	6 cut(s)	60, 307, 466, 472, 601, 640
BseGI	GGATG	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	349, 494
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	371, 543
BseRI	GAGGAG	5 cut(s)	329, 425, 499, 502, 505
BseXI	GCAGC	3 cut(s)	520, 523, 754
BseYI	CCCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	13
Bsh1236I	CGCG	5 cut(s)	420, 422, 585, 603, 681
Bsh1285I	CGRYCG	3 cut(s)	163, 418, 426
BshFI	GGCC	6 cut(s)	65, 333, 353, 465, 471, 738
BsiEI	CGRYCG	3 cut(s)	163, 418, 426
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	459, 540
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	2 cut(s)	349, 494
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	6 cut(s)	65, 333, 353, 465, 471, 738
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	325, 415, 482, 597, 758
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	6 cut(s)	65, 333, 353, 465, 471, 738
BspCNI	CTCAG	2 cut(s)	370, 544
BspFNI	CGCG	5 cut(s)	420, 422, 585, 603, 681
BspLI	GGNNCC	1 cut(s)	544
BspPI	GGATC	2 cut(s)	592, 766
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	6 cut(s)	60, 307, 466, 472, 601, 640
BssMI	GATC	5 cut(s)	325, 415, 482, 597, 758
BssNI	GRCGYC	2 cut(s)	5, 645
BssT1I	CCWWGG	2 cut(s)	60, 472
Bst2UI	CCWGG	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	5, 645
BstC8I	GCNNGC	4 cut(s)	38, 42, 412, 541
BstDEI	CTNAG	3 cut(s)	357, 552, 762
BstDSI	CCRYGG	4 cut(s)	60, 466, 601, 640
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	5 cut(s)	420, 422, 585, 603, 681
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	5 cut(s)	328, 418, 485, 600, 761
BstMBI	GATC	5 cut(s)	325, 415, 482, 597, 758
BstMCI	CGRYCG	3 cut(s)	163, 418, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 243, 468, 530, 642
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	5 cut(s)	420, 422, 585, 603, 681
BstV1I	GCAGC	3 cut(s)	520, 523, 754
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
BsuRI	GGCC	6 cut(s)	65, 333, 353, 465, 471, 738
BtgI	CCRYGG	4 cut(s)	60, 466, 601, 640
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	4 cut(s)	38, 42, 412, 541
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	539
Cfr42I	CCGCGG	1 cut(s)	604
CseI	GACGC	3 cut(s)	301, 591, 634
Csp6I	GTAC	4 cut(s)	250, 452, 500, 741
CviAII	CATG	4 cut(s)	61, 94, 232, 392
CviQI	GTAC	4 cut(s)	250, 452, 500, 741
DdeI	CTNAG	3 cut(s)	357, 552, 762
DpnI	GATC	5 cut(s)	327, 417, 484, 599, 760
DpnII	GATC	5 cut(s)	325, 415, 482, 597, 758
DraI	TTTAAA	1 cut(s)	262
EaeI	YGGCCR	5 cut(s)	63, 331, 463, 469, 736
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	60, 472
Eco24I	GRGCYC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	60, 472
EcoT22I	ATGCAT	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	2 cut(s)	60, 472
FaeI	CATG	4 cut(s)	64, 97, 235, 395
FaiI	YATR	9 cut(s)	47, 62, 71, 95, 233, 393, 397, 634, 735
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	4 cut(s)	60, 93, 231, 391
FauI	CCCGC	2 cut(s)	41, 596
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	5 cut(s)	78, 463, 534, 537, 768
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	5 cut(s)	78, 463, 534, 537, 768
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	5 cut(s)	78, 463, 534, 537, 768
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	6 cut(s)	65, 333, 353, 465, 471, 738
HapII	CCGG	2 cut(s)	459, 540
HgaI	GACGC	3 cut(s)	301, 591, 634
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	2 cut(s)	5, 645
Hin1II	CATG	4 cut(s)	64, 97, 235, 395
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HpaII	CCGG	2 cut(s)	459, 540
HphI	GGTGA	2 cut(s)	180, 392
Hpy166II	GTNNAC	3 cut(s)	383, 500, 721
Hpy188I	TCNGA	5 cut(s)	109, 311, 360, 563, 597
Hpy188III	TCNNGA	4 cut(s)	241, 323, 403, 488
Hpy8I	GTNNAC	3 cut(s)	383, 500, 721
Hpy99I	CGWCG	3 cut(s)	295, 585, 669
HpyAV	CCTTC	6 cut(s)	109, 400, 455, 529, 608, 769
HpyCH4V	TGCA	4 cut(s)	30, 86, 399, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 243, 468, 530, 642
HpyF3I	CTNAG	3 cut(s)	357, 552, 762
Hsp92I	GRCGYC	2 cut(s)	5, 645
Hsp92II	CATG	4 cut(s)	64, 97, 235, 395
HspAI	GCGC	1 cut(s)	420
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
KspI	CCGCGG	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	325, 415, 482, 597, 758
LmnI	GCTCC	2 cut(s)	110, 548
LpnPI	CCDG	9 cut(s)	22, 302, 335, 362, 362, 462, 472, 501, 553
Lsp1109I	GCAGC	3 cut(s)	520, 523, 754
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	566
MalI	GATC	5 cut(s)	327, 417, 484, 599, 760
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	5 cut(s)	325, 415, 482, 597, 758
MboII	GAAGA	7 cut(s)	3, 6, 9, 12, 247, 569, 696
MfeI	CAATTG	2 cut(s)	173, 746
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	5 cut(s)	173, 221, 263, 369, 746
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	132, 666
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	401
MroNI	GCCGGC	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	4 cut(s)	36, 376, 533, 603
MspI	CCGG	2 cut(s)	459, 540
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	2 cut(s)	173, 746
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	5 cut(s)	420, 422, 585, 603, 681
MwoI	GCNNNNNNNGC	5 cut(s)	83, 243, 468, 530, 642
NaeI	GCCGGC	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	325, 415, 482, 597, 758
NgoMIV	GCCGGC	1 cut(s)	539
NlaIII	CATG	4 cut(s)	64, 97, 235, 395
NlaIV	GGNNCC	1 cut(s)	544
NsiI	ATGCAT	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	79, 464, 535, 538, 769
Ple19I	CGATCG	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	758
PvuI	CGATCG	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	376
RgaI	GCGATCGC	1 cut(s)	418
RsaI	GTAC	4 cut(s)	251, 453, 501, 742
RsaNI	GTAC	4 cut(s)	250, 452, 500, 741
SacI	GAGCTC	1 cut(s)	558
SacII	CCGCGG	1 cut(s)	604
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	5 cut(s)	78, 463, 534, 537, 768
Sau3AI	GATC	5 cut(s)	325, 415, 482, 597, 758
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	558
SfaAI	GCGATCGC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	408
Sfr274I	CTCGAG	1 cut(s)	241
Sfr303I	CCGCGG	1 cut(s)	604
SgfI	GCGATCGC	1 cut(s)	418
SgrBI	CCGCGG	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
SpeI	ACTAGT	1 cut(s)	565
Sse9I	AATT	5 cut(s)	173, 221, 263, 369, 746
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	60, 472
TaqI	TCGA	6 cut(s)	242, 269, 290, 402, 481, 580
TasI	AATT	5 cut(s)	173, 221, 263, 369, 746
TatI	WGTACW	1 cut(s)	451
TauI	GCSGC	2 cut(s)	80, 465
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	3 cut(s)	533, 536, 767
TspRI	CASTG	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	720
XspI	CTAG	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.