RchiOBHm_Chr4g0419151

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0022720
Physical Location & Seq
Forward (+)
44677209 .. 44679053
1845 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGTGCATATCCATGTATTTAGTGGCTTACTTGGTTGGCAATTTACATTTAACTTCGGCAAAGTCTGAAACCATAGTCACCAATTTCATGGGCACTTTGAATCTCCTTGGCCTTCTTGGTGGTTTCGTTGCAGATGCCAAACTTGGACGCTACCTGACTGTTCTACTCTCTGCAACCTTAACTGCTCTGGGGATAACTTTGTTAACAATAGCCACATCCGTTCTGAGAATGAGACCCCCTGCGTGTGAAGGCAACCAAGAATGCATTGAGGCCACAGGCAGCCAATTAGCCCTGCTCTATGCTGCCTTATACCTTACAGCACTAGGTGGCGGTGGAATAAAATCCAACGTCTCAGGTTTTGGCTCTGATCAATTTGATTCCTCAGACCCAAAGGAAGAGAAGTCCTTGATCTTTTTCTTCAACAGGTTCTATTTTGGCATCAGCATTGGTTCTCTGTTTGCGGTACTCGTCCTGGTGTATATACAAGACAATATTGGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

167

Amino Acids

17.84

Weight (kDa)

5.73

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 51 - 166 3.3e-30 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0022720)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0419151
rosa_samantha Rh4AG219300 Rh4BG220700 Rh4DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 330, 461
AcoI YGGCCR 1 cut(s) 496
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 1 cut(s) 465
AgsI TTSAA 2 cut(s) 100, 421
AjnI CCWGG 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 226, 355
AoxI GGCC 3 cut(s) 109, 270, 496
ApeKI GCWGC 2 cut(s) 279, 302
AsuHPI GGTGA 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 289, 291
BciT130I CCWGG 1 cut(s) 473
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 226, 355
BfaI CTAG 1 cut(s) 323
BisI GCNGC 2 cut(s) 280, 303
BlsI GCNGC 2 cut(s) 281, 304
Bme1390I CCNGG 1 cut(s) 473
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 2 cut(s) 124, 447
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 215
BseMII CTCAG 3 cut(s) 215, 366, 396
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 2 cut(s) 289, 291
BshFI GGCC 3 cut(s) 111, 272, 498
BsmAI GTCTC 2 cut(s) 226, 355
BsmBI CGTCTC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 3 cut(s) 111, 272, 498
Bso31I GGTCTC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 367, 408
BspACI CCGC 2 cut(s) 330, 461
BspANI GGCC 3 cut(s) 111, 272, 498
BspCNI CTCAG 3 cut(s) 216, 365, 395
BspTNI GGTCTC 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 2 cut(s) 367, 408
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 390
BstDEI CTNAG 3 cut(s) 224, 352, 382
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 2 cut(s) 370, 411
BstMAI GTCTC 2 cut(s) 226, 355
BstMBI GATC 2 cut(s) 367, 408
BstNI CCWGG 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 289, 291
BstXI CCANNNNNNTGG 1 cut(s) 88
BsuRI GGCC 3 cut(s) 111, 272, 498
BtsCI GGATG 1 cut(s) 215
CseI GACGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 464
CviAII CATG 2 cut(s) 13, 88
CviJI RGCY 8 cut(s) 26, 111, 212, 272, 282, 290, 363, 498
CviKI_1 RGCY 8 cut(s) 26, 111, 212, 272, 282, 290, 363, 498
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 3 cut(s) 224, 352, 382
DpnI GATC 2 cut(s) 369, 410
DpnII GATC 2 cut(s) 367, 408
DraIII CACNNNGTG 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 2 cut(s) 16, 91
FaiI YATR 8 cut(s) 8, 14, 74, 89, 300, 310, 480, 482
FatI CATG 2 cut(s) 12, 87
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 280, 303
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 280, 303
FspBI CTAG 1 cut(s) 323
GluI GCNGC 2 cut(s) 280, 303
HaeIII GGCC 3 cut(s) 111, 272, 498
HgaI GACGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 16, 91
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 100, 377
HpaI GTTAAC 1 cut(s) 204
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 67, 225, 367, 385
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 122, 242
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 6, 131, 173, 264
HpyF3I CTNAG 3 cut(s) 224, 352, 382
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 16, 91
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 367, 408
LpnPI CCDG 9 cut(s) 167, 173, 252, 261, 305, 339, 409, 458, 485
Lsp1109I GCAGC 2 cut(s) 289, 291
LweI GCATC 2 cut(s) 124, 447
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 369, 410
MboI GATC 2 cut(s) 367, 408
MboII GAAGA 2 cut(s) 407, 409
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 4 cut(s) 40, 82, 284, 371
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 2 cut(s) 262, 391
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 3 cut(s) 50, 179, 203
MslI CAYNNNNRTG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 473
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 473
NdeII GATC 2 cut(s) 367, 408
NlaIII CATG 2 cut(s) 16, 91
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 266
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 100, 377
PkrI GCNGC 2 cut(s) 281, 304
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 3 cut(s) 50, 179, 203
SatI GCNGC 2 cut(s) 280, 303
Sau3AI GATC 2 cut(s) 367, 408
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 1 cut(s) 95
SetI ASST 7 cut(s) 156, 179, 315, 328, 351, 358, 428
SfaNI GCATC 2 cut(s) 124, 447
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 4 cut(s) 40, 82, 284, 371
SsiI CCGC 2 cut(s) 330, 461
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 351
TasI AATT 4 cut(s) 40, 82, 284, 371
TfiI GAWTC 2 cut(s) 100, 377
Tru1I TTAA 3 cut(s) 50, 179, 203
Tru9I TTAA 3 cut(s) 50, 179, 203
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 279, 302
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.