Rh4DG218100

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0022720
Physical Location & Seq
Forward (+)
41867034 .. 41888294
21261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG218100.1

Sequence Viewer

Length: 1149 bp
ATGGTGGAGGTTGGTCATGAGATCTCTAGAAGTCGAATGCGGAGATCAAGAGATATTGATGATACCAGAGAGGCTCATTCATCGATTCATCGATTTACCAGAGGGGTGGAGATTGGAGTAGTATGTATTGGCTCGGTAGGATTGGAAGATGAGGAAAATGATTGTAAAGCTACCAGAAATGAGGAGGTCCTCGGCCAGAAAAATTTAGAAAGTAAAGTTCCAGATATTGCAAAATCTGGATTTACATCGGCATGGTTGCCGCCATCAACTCATTCCTTTGCCCCGGAAGCAAAGTCTGCAACCATAGTCACCAATTTCATGGGCACTTTGAATCTCCTTGGCCTTCTTGGTAGTTTCGTTGCAGATGCCAAACTCGGGCGCTACCTGACTGTTCTACTCTCTGCAACCTTAACTGCTCTGGGGATAACTTTGTTAACAATAGCCACATCCGTTCCGAGAATGAGACCCCCTGCGTGTGAAGGCAACCAAGAATGCATTGAGGCCACAGGCAGCCAATTAGCCCTGCTCTATGCTGCCTTATACCTTACAGCACTAGGTGGCGGTGGAATAAAATCCAACGTCTCAGGTTTTGGCTCTGACCAATTTGATTCCTCAGACCCAAAGGAAGAGAAGTCCATGATCTTTTTCTTCAACAGGTTCTATTTTGGCATCAGCATTGGTTCTCTGTTTGCGGTACTCGTCCTGGTGTATATACAAGACAATATTGGCCGAGGACTCGGTTATGGAATATCAGCAGGGACAGTGGTGATTGCTCTCATCGTGTTACTCTTGGGAACACCATTCTATCGATTCAAAAAGCCTCGAGGCAGCCCTTTGACTATGATGTGGAGGGTGATATTTTTGGCATGGAAGAAGAGGGTTCATCCTTATCCTTCTCATCCAAGCCTTTTGAATCAATACCAAGAAGCCAAGCAGATTCCACACACACAGAAACTCAAGTGTCTCGACAAAGCTGCAATACTAGATGAATATGCTGCTAGTGAAGAAAAAAGAAGCAACCCTTGGATAGTAGCCACAGTGACTCAAGTTGAAGAGGTGAAACTGGTTTTCAAGCTCTTGCCAATCTGGTCAACATGTATTCTCTTTTGGACGGTCTACCCTTCACCATTGAACAAGCGACCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

382

Amino Acids

42.14

Weight (kDa)

8.9

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 128 - 373 2.3e-60 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022720)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0419151
rosa_samantha Rh4AG219300 Rh4BG220700 Rh4DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 822
AccI GTMKAC 1 cut(s) 1116
AciI CCGC 4 cut(s) 40, 260, 561, 692
AcoI YGGCCR 2 cut(s) 193, 727
AcsI RAATTY 1 cut(s) 202
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 375
AflIII ACRYGT 1 cut(s) 1094
AgsI TTSAA 7 cut(s) 331, 652, 814, 913, 1052, 1072, 1132
AjnI CCWGG 1 cut(s) 702
AjuI GAANNNNNNNTTGG 2 cut(s) 1006, 1038
AluBI AGCT 3 cut(s) 170, 974, 1075
AluI AGCT 3 cut(s) 170, 974, 1075
Alw26I GTCTC 3 cut(s) 457, 586, 968
Ama87I CYCGRG 2 cut(s) 374, 822
AoxI GGCC 4 cut(s) 193, 340, 501, 727
ApeKI GCWGC 5 cut(s) 510, 533, 828, 974, 995
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 5 cut(s) 301, 778, 865, 1069, 1116
AvaI CYCGRG 2 cut(s) 374, 822
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 326
BbvI GCAGC 5 cut(s) 520, 522, 840, 961, 982
BccI CCATC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 1 cut(s) 704
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 457, 586, 968
BfaI CTAG 4 cut(s) 27, 554, 983, 999
BfoI RGCGCY 1 cut(s) 382
BglII AGATCT 1 cut(s) 21
BisI GCNGC 6 cut(s) 260, 511, 534, 829, 975, 996
BlsI GCNGC 6 cut(s) 261, 512, 535, 830, 976, 997
Bme1390I CCNGG 2 cut(s) 284, 704
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 374, 822
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 284, 704
BmsI GCATC 2 cut(s) 355, 678
BpuEI CTTGAG 2 cut(s) 941, 1029
BpuMI CCSGG 1 cut(s) 284
Bsa29I ATCGAT 3 cut(s) 83, 91, 808
BsaBI GATNNNNATC 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 5 cut(s) 190, 282, 337, 730, 1022
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 1068
Bse8I GATNNNNATC 1 cut(s) 244
BseBI CCWGG 1 cut(s) 704
BseCI ATCGAT 3 cut(s) 83, 91, 808
BseDI CCNNGG 5 cut(s) 190, 282, 337, 730, 1022
BseGI GGATG 3 cut(s) 446, 883, 898
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 597, 627
BseNI ACTGG 1 cut(s) 1068
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 5 cut(s) 520, 522, 840, 961, 982
BshFI GGCC 4 cut(s) 195, 342, 503, 729
BshVI ATCGAT 3 cut(s) 83, 91, 808
BsiHKCI CYCGRG 2 cut(s) 374, 822
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 3 cut(s) 457, 586, 968
BsmBI CGTCTC 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 772
BsmI GAATGC 2 cut(s) 42, 497
BsnI GGCC 4 cut(s) 195, 342, 503, 729
Bso31I GGTCTC 1 cut(s) 457
BsoBI CYCGRG 2 cut(s) 374, 822
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 3 cut(s) 21, 44, 639
BspACI CCGC 4 cut(s) 40, 260, 561, 692
BspANI GGCC 4 cut(s) 195, 342, 503, 729
BspCNI CTCAG 2 cut(s) 596, 626
BspDI ATCGAT 3 cut(s) 83, 91, 808
BspHI TCATGA 2 cut(s) 16, 1145
BspTNI GGTCTC 1 cut(s) 457
BsrI ACTGG 1 cut(s) 1068
BssECI CCNNGG 5 cut(s) 190, 282, 337, 730, 1022
BssMI GATC 3 cut(s) 21, 44, 639
BssT1I CCWWGG 2 cut(s) 337, 1022
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 4 cut(s) 391, 763, 1039, 1114
Bst6I CTCTTC 3 cut(s) 621, 869, 1047
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 583, 613
BstF5I GGATG 3 cut(s) 446, 883, 898
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 24, 47, 642
BstMAI GTCTC 3 cut(s) 457, 586, 968
BstMBI GATC 3 cut(s) 21, 44, 639
BstMWI GCNNNNNNNGC 2 cut(s) 287, 296
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 1098
BstSCI CCNGG 2 cut(s) 282, 702
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 5 cut(s) 520, 522, 840, 961, 982
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 2 cut(s) 106, 319
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 3 cut(s) 83, 91, 808
BsuRI GGCC 4 cut(s) 195, 342, 503, 729
BsuTUI ATCGAT 3 cut(s) 83, 91, 808
BtsCI GGATG 3 cut(s) 446, 883, 898
BtsIMutI CAGTG 2 cut(s) 768, 1044
CciI TCATGA 2 cut(s) 16, 1145
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 3 cut(s) 83, 91, 808
Csp6I GTAC 1 cut(s) 695
CviAII CATG 7 cut(s) 17, 252, 319, 637, 867, 1095, 1146
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 2 cut(s) 583, 613
DpnI GATC 3 cut(s) 23, 46, 641
DpnII GATC 3 cut(s) 21, 44, 639
DraIII CACNNNGTG 1 cut(s) 557
EaeI YGGCCR 2 cut(s) 193, 727
Eam1104I CTCTTC 3 cut(s) 621, 869, 1047
EarI CTCTTC 3 cut(s) 621, 869, 1047
Eco130I CCWWGG 2 cut(s) 337, 1022
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 187
Eco88I CYCGRG 2 cut(s) 374, 822
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 337, 1022
EcoT22I ATGCAT 1 cut(s) 497
ErhI CCWWGG 2 cut(s) 337, 1022
Esp3I CGTCTC 1 cut(s) 586
FaeI CATG 7 cut(s) 20, 255, 322, 640, 870, 1098, 1149
FalI AAGNNNNNCTT 2 cut(s) 1006, 1038
FaqI GGGAC 1 cut(s) 772
FatI CATG 7 cut(s) 16, 251, 318, 636, 866, 1094, 1145
FblI GTMKAC 1 cut(s) 1116
Fnu4HI GCNGC 6 cut(s) 260, 511, 534, 829, 975, 996
FokI GGATG 3 cut(s) 433, 870, 885
Fsp4HI GCNGC 6 cut(s) 260, 511, 534, 829, 975, 996
FspBI CTAG 4 cut(s) 27, 554, 983, 999
GlaI GCGC 1 cut(s) 380
GluI GCNGC 6 cut(s) 260, 511, 534, 829, 975, 996
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 4 cut(s) 195, 342, 503, 729
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 381
Hin1II CATG 7 cut(s) 20, 255, 322, 640, 870, 1098, 1149
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 2 cut(s) 435, 1092
HindII GTYRAC 2 cut(s) 435, 1092
HinfI GANTC 8 cut(s) 85, 331, 608, 735, 810, 913, 937, 1042
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 1 cut(s) 284
HphI GGTGA 5 cut(s) 301, 778, 865, 1069, 1116
Hpy166II GTNNAC 3 cut(s) 435, 1092, 1117
Hpy188I TCNGA 3 cut(s) 456, 598, 616
Hpy188III TCNNGA 7 cut(s) 17, 27, 48, 221, 237, 965, 1146
Hpy8I GTNNAC 3 cut(s) 435, 1092, 1117
HpyAV CCTTC 4 cut(s) 353, 473, 903, 1131
HpyCH4III ACNGT 4 cut(s) 391, 763, 1039, 1114
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 6 cut(s) 230, 299, 362, 404, 495, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 296
HpyF3I CTNAG 2 cut(s) 583, 613
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 7 cut(s) 20, 255, 322, 640, 870, 1098, 1149
HspAI GCGC 1 cut(s) 379
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 3 cut(s) 21, 44, 639
Lsp1109I GCAGC 5 cut(s) 520, 522, 840, 961, 982
LweI GCATC 2 cut(s) 355, 678
MaeI CTAG 4 cut(s) 27, 554, 983, 999
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 3 cut(s) 307, 783, 1039
MalI GATC 3 cut(s) 23, 46, 641
MboI GATC 3 cut(s) 21, 44, 639
MboII GAAGA 7 cut(s) 158, 638, 640, 883, 886, 1016, 1064
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 4 cut(s) 202, 313, 515, 602
MlyI GAGTC 2 cut(s) 729, 1036
MmeI TCCRAC 1 cut(s) 600
Mph1103I ATGCAT 1 cut(s) 497
MseI TTAA 2 cut(s) 410, 434
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 284, 704
Mva1269I GAATGC 2 cut(s) 42, 497
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 2 cut(s) 287, 296
NciI CCSGG 1 cut(s) 284
NdeII GATC 3 cut(s) 21, 44, 639
NlaIII CATG 7 cut(s) 20, 255, 322, 640, 870, 1098, 1149
NmeAIII GCCGAG 2 cut(s) 171, 755
NmuCI GTSAC 2 cut(s) 307, 1039
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 1098
PaeR7I CTCGAG 1 cut(s) 822
PagI TCATGA 2 cut(s) 16, 1145
PciI ACATGT 1 cut(s) 1094
PctI GAATGC 2 cut(s) 42, 497
PfeI GAWTC 6 cut(s) 85, 331, 608, 810, 913, 937
PkrI GCNGC 6 cut(s) 261, 512, 535, 830, 976, 997
PleI GAGTC 2 cut(s) 729, 1036
PpsI GAGTC 2 cut(s) 729, 1036
PpuMI RGGWCCY 1 cut(s) 187
PscI ACATGT 1 cut(s) 1094
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 822
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 2 cut(s) 410, 434
SatI GCNGC 6 cut(s) 260, 511, 534, 829, 975, 996
Sau3AI GATC 3 cut(s) 21, 44, 639
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 2 cut(s) 729, 1036
ScrFI CCNGG 2 cut(s) 284, 704
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 2 cut(s) 355, 678
Sfr274I CTCGAG 1 cut(s) 822
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 822, 956, 1044
SmoI CTYRAG 3 cut(s) 822, 956, 1044
Sse9I AATT 4 cut(s) 202, 313, 515, 602
SsiI CCGC 4 cut(s) 40, 260, 561, 692
SspI AATATT 1 cut(s) 724
SspMI CTAG 4 cut(s) 27, 554, 983, 999
StyD4I CCNGG 2 cut(s) 282, 702
StyI CCWWGG 2 cut(s) 337, 1022
TaaI ACNGT 4 cut(s) 391, 763, 1039, 1114
TaiI ACGT 1 cut(s) 582
TaqI TCGA 6 cut(s) 34, 83, 91, 808, 823, 966
TasI AATT 4 cut(s) 202, 313, 515, 602
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 6 cut(s) 85, 331, 608, 810, 913, 937
Tru1I TTAA 2 cut(s) 410, 434
Tru9I TTAA 2 cut(s) 410, 434
TscAI CASTG 2 cut(s) 768, 1044
TseFI GTSAC 2 cut(s) 307, 1039
TseI GCWGC 5 cut(s) 510, 533, 828, 974, 995
Tsp45I GTSAC 2 cut(s) 307, 1039
TspDTI ATGAA 6 cut(s) 69, 77, 307, 872, 1002, 1134
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 2 cut(s) 768, 1044
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 202
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 1098
XhoI CTCGAG 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 1116
XspI CTAG 4 cut(s) 27, 554, 983, 999
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.