Rh4BG220700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0022720
Physical Location & Seq
Forward (+)
38171916 .. 38172800
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG220700.1

Sequence Viewer

Length: 717 bp
ATGGGCATATCCATGAATTTAGTGACTTACTTGGTTGGCAATTTACATTTAACTTCAGCAAAGTCTGCAACCATAGTCACCAATTTCATGGGCACTTTGAATCTCCTTGGCCTTCTTGGTAGTTTCGTTGCAGATGCCAAACTCGGGCGCTACCTGACTGTTCTACTCTCTGCAACCTTAACTGCTCTGGGGATAACTTTGTTAACAATAGCCACATCCGTTCCGAGAATGAGACCCCCTGCGTGTGACGGCAACCAAGAATGCATTGAGGCCACAGGCAGCCAATTAGCCCTGCTCTATGCTGCCTTATACCTTACAGCACTAGGTGGCGGTGGAATAAAATCCAACGTCTCAGGTTTTGGCTCTGACCAATTTGATTCCTCAGACCCAAAGGAAGAGAAGTCCATGATCTTTTTCTTCAACAGGTTCTATTTTGGCATCAGCATTGGTTCTCTGTTTGCGGTACTCGTCCTGGTGTATATACAAGACAATATTGGCCGAGGACTCGGTTATGGAATATCAGCAGGGACAGTGGTGATTGCTCTCATCGTGTTACTCTTGGGAACACCATTCTATCGATTCAAAAAGCCTCGAGGCAGCCCTTTGACTATGATGTGGAGGGTGATATTTTTGGCAGGGAAGAAGAGGGTTCATCCAAGCCTTTTGAATCAATACCAAGAAGCCAAGCAGATTCCACACACACAGAAACTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

238

Amino Acids

25.69

Weight (kDa)

9.72

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 51 - 224 6.1e-50 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022720)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0419151
rosa_samantha Rh4AG219300 Rh4BG220700 Rh4DG218100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 591
AciI CCGC 2 cut(s) 330, 461
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 4 cut(s) 100, 421, 583, 667
AjnI CCWGG 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 226, 355
Ama87I CYCGRG 2 cut(s) 143, 591
AoxI GGCC 3 cut(s) 109, 270, 496
ApeKI GCWGC 3 cut(s) 279, 302, 597
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 70, 547, 634
AvaI CYCGRG 2 cut(s) 143, 591
BaeGI GKGCMC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 289, 291, 609
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 226, 355
BfaI CTAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 151
BisI GCNGC 3 cut(s) 280, 303, 598
BlsI GCNGC 3 cut(s) 281, 304, 599
Bme1390I CCNGG 1 cut(s) 473
BmeT110I CYCGRG 2 cut(s) 143, 591
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 2 cut(s) 124, 447
BpuEI CTTGAG 1 cut(s) 695
Bsa29I ATCGAT 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 106, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 473
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 106, 499
BseGI GGATG 2 cut(s) 215, 652
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 366, 396
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 3 cut(s) 289, 291, 609
BshFI GGCC 3 cut(s) 111, 272, 498
BshVI ATCGAT 1 cut(s) 577
BsiHKCI CYCGRG 2 cut(s) 143, 591
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 226, 355
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 3 cut(s) 111, 272, 498
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 2 cut(s) 143, 591
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 2 cut(s) 330, 461
BspANI GGCC 3 cut(s) 111, 272, 498
BspCNI CTCAG 2 cut(s) 365, 395
BspDI ATCGAT 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 106, 499
BssMI GATC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 2 cut(s) 160, 532
Bst6I CTCTTC 2 cut(s) 390, 638
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 352, 382
BstF5I GGATG 2 cut(s) 215, 652
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 226, 355
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 289, 291, 609
BstXI CCANNNNNNTGG 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 577
BsuRI GGCC 3 cut(s) 111, 272, 498
BsuTUI ATCGAT 1 cut(s) 577
BtsCI GGATG 2 cut(s) 215, 652
BtsIMutI CAGTG 1 cut(s) 537
CfoI GCGC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 577
Csp6I GTAC 1 cut(s) 464
CviAII CATG 3 cut(s) 13, 88, 406
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 2 cut(s) 352, 382
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DraIII CACNNNGTG 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 390, 638
EarI CTCTTC 2 cut(s) 390, 638
Eco130I CCWWGG 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 143, 591
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 3 cut(s) 16, 91, 409
FaqI GGGAC 1 cut(s) 541
FatI CATG 3 cut(s) 12, 87, 405
Fnu4HI GCNGC 3 cut(s) 280, 303, 598
FokI GGATG 2 cut(s) 202, 639
Fsp4HI GCNGC 3 cut(s) 280, 303, 598
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 149
GluI GCNGC 3 cut(s) 280, 303, 598
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 3 cut(s) 111, 272, 498
HhaI GCGC 1 cut(s) 150
Hin1II CATG 3 cut(s) 16, 91, 409
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 6 cut(s) 100, 377, 504, 579, 667, 691
HpaI GTTAAC 1 cut(s) 204
HphI GGTGA 3 cut(s) 70, 547, 634
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 225, 367, 385
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 160, 532
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 68, 131, 173, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 352, 382
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 16, 91, 409
HspAI GCGC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 408
Lsp1109I GCAGC 3 cut(s) 289, 291, 609
LweI GCATC 2 cut(s) 124, 447
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 4 cut(s) 22, 76, 245, 552
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 4 cut(s) 407, 409, 652, 655
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 5 cut(s) 16, 40, 82, 284, 371
MlyI GAGTC 1 cut(s) 498
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 7 cut(s) 262, 391, 494, 587, 600, 612, 639
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 3 cut(s) 50, 179, 203
MslI CAYNNNNRTG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 473
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 473
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 408
NlaIII CATG 3 cut(s) 16, 91, 409
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 3 cut(s) 22, 76, 245
NsiI ATGCAT 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 591
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 5 cut(s) 100, 377, 579, 667, 691
PkrI GCNGC 3 cut(s) 281, 304, 599
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspXI VCTCGAGB 1 cut(s) 591
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 3 cut(s) 50, 179, 203
SatI GCNGC 3 cut(s) 280, 303, 598
Sau3AI GATC 1 cut(s) 408
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 1 cut(s) 95
SetI ASST 7 cut(s) 156, 179, 315, 328, 351, 358, 428
SfaNI GCATC 2 cut(s) 124, 447
Sfr274I CTCGAG 1 cut(s) 591
SlaI CTCGAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 591, 710
SmoI CTYRAG 2 cut(s) 591, 710
Sse9I AATT 5 cut(s) 16, 40, 82, 284, 371
SsiI CCGC 2 cut(s) 330, 461
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 160, 532
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 577, 592
TasI AATT 5 cut(s) 16, 40, 82, 284, 371
TfiI GAWTC 5 cut(s) 100, 377, 579, 667, 691
Tru1I TTAA 3 cut(s) 50, 179, 203
Tru9I TTAA 3 cut(s) 50, 179, 203
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 3 cut(s) 22, 76, 245
TseI GCWGC 3 cut(s) 279, 302, 597
Tsp45I GTSAC 3 cut(s) 22, 76, 245
TspDTI ATGAA 3 cut(s) 29, 76, 641
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 537
XapI RAATTY 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 591
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.