RchiOBHm_Chr4g0436961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019228
Physical Location & Seq
Forward (+)
60211405 .. 60212127
723 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGCTTGTGTGGCTGTCTTTTGCTTTGGCCGGCCTAAGGACATTATCGGTTAGAAGTTTACAAAAGCATTGGACAAAGCAAACTCTTTGCACCCACTTGGAAGCTTCAATGAAGCTTCGGGTTTCCAACACTAACGTTGGTTGCTTCATTATAAAGTCACAGACATTTCAAGTGCGATTAGGGAACACTACATCATCCATAATTGTGTTCCTGATACTTGTTCTCTTCCTTATTATTTCCATGGCTTCTCTAACCTCTCTTATTATTCAAACTAGGATTTGCAGCTGCTGGGCAGCTCAGAGTCAGTGGAAGCCAAAAGCATCAGATTACTTGCCAGTTTCTATTACTGATTGCCATATTGAGTTGCACAGTAACCAACCGAAGACTCCACTAAGTTTGGGGAAGACAATCCTCAGTCTCACATTTCAAGCCATTGTCAGCTGCGCTCTTGCTTTTCAAACCAACAATTCATCACACATTTCACCGGCTTGGCACATTGTTGGGGTGGCCGTGGCAATAGCTTTTGCAGCTTGTTTCTCTGGAATTTTCTTAAGGCATTCCTACCCAAATGCTGCAACTATCATTGAGAAAACTGGGTGTGCTTCGGCCGCAATCGCGTTTTTCCTAATGACGAGTATTTTTCTCCCTAGCAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.04

Weight (kDa)

9.53

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019228)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28851
rosa_chinensis RchiOBHm_Chr4g0436961
rosa_laevigata RLG00000006480
rosa_rugosa Rorug04G0297700
rosa_samantha Rh4AG352000 Rh4BG361100 Rh4CG375400 Rh4DG355200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccII CGCG 1 cut(s) 617
AciI CCGC 1 cut(s) 609
AclI AACGTT 1 cut(s) 135
AcoI YGGCCR 3 cut(s) 27, 507, 606
AcsI RAATTY 1 cut(s) 543
AfiI CCNNNNNNNGG 1 cut(s) 36
AflII CTTAAG 1 cut(s) 550
AgsI TTSAA 5 cut(s) 108, 170, 269, 428, 458
AluBI AGCT 7 cut(s) 104, 115, 285, 296, 441, 521, 530
AluI AGCT 7 cut(s) 104, 115, 285, 296, 441, 521, 530
Alw26I GTCTC 1 cut(s) 422
AlwNI CAGNNNCTG 1 cut(s) 288
AoxI GGCC 4 cut(s) 27, 31, 507, 606
ApeKI GCWGC 6 cut(s) 282, 285, 293, 441, 527, 572
ApoI RAATTY 1 cut(s) 543
AspLEI GCGC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 389, 410
BbvI GCAGC 6 cut(s) 272, 294, 305, 428, 539, 559
BceAI ACGGC 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 273, 648
BfrI CTTAAG 1 cut(s) 550
BisI GCNGC 7 cut(s) 283, 286, 294, 442, 528, 573, 609
BlsI GCNGC 7 cut(s) 284, 287, 295, 443, 529, 574, 610
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 329
BmuI ACTGGG 1 cut(s) 603
BpiI GAAGAC 2 cut(s) 389, 410
BsaJI CCNNGG 2 cut(s) 240, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse118I RCCGGY 2 cut(s) 29, 484
Bse1I ACTGG 2 cut(s) 335, 598
Bse21I CCTNAGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 240, 510
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 311, 427
BseNI ACTGG 2 cut(s) 335, 598
BseX3I CGGCCG 1 cut(s) 606
BseXI GCAGC 6 cut(s) 272, 294, 305, 428, 539, 559
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 617
Bsh1285I CGRYCG 1 cut(s) 609
BshFI GGCC 4 cut(s) 29, 33, 509, 608
BsiEI CGRYCG 1 cut(s) 609
BsiSI CCGG 2 cut(s) 30, 485
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 4 cut(s) 29, 33, 509, 608
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 1 cut(s) 609
BspANI GGCC 4 cut(s) 29, 33, 509, 608
BspCNI CTCAG 2 cut(s) 310, 426
BspFNI CGCG 1 cut(s) 617
BspHI TCATGA 1 cut(s) 659
BspTI CTTAAG 1 cut(s) 550
BsrFI RCCGGY 2 cut(s) 29, 484
BsrI ACTGG 2 cut(s) 335, 598
BssAI RCCGGY 2 cut(s) 29, 484
BssECI CCNNGG 2 cut(s) 240, 510
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 1 cut(s) 230
BstAFI CTTAAG 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 4 cut(s) 35, 297, 392, 413
BstDSI CCRYGG 2 cut(s) 240, 510
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 617
BstHHI GCGC 1 cut(s) 446
BstMAI GTCTC 1 cut(s) 422
BstMCI CGRYCG 1 cut(s) 609
BstMWI GCNNNNNNNGC 4 cut(s) 10, 527, 608, 614
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 6 cut(s) 272, 294, 305, 428, 539, 559
BstV2I GAAGAC 2 cut(s) 389, 410
BstZI CGGCCG 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 4 cut(s) 29, 33, 509, 608
BtgI CCRYGG 2 cut(s) 240, 510
BtsCI GGATG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 659
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 2 cut(s) 29, 484
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 2 cut(s) 241, 660
DdeI CTNAG 4 cut(s) 35, 297, 392, 413
EaeI YGGCCR 3 cut(s) 27, 507, 606
EagI CGGCCG 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 240
Eco52I CGGCCG 1 cut(s) 606
Eco81I CCTNAGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 244, 663
FaiI YATR 5 cut(s) 152, 200, 242, 357, 661
FatI CATG 2 cut(s) 240, 659
Fnu4HI GCNGC 7 cut(s) 283, 286, 294, 442, 528, 573, 609
FokI GGATG 1 cut(s) 181
FseI GGCCGGCC 1 cut(s) 33
Fsp4HI GCNGC 7 cut(s) 283, 286, 294, 442, 528, 573, 609
FspBI CTAG 2 cut(s) 273, 648
GlaI GCGC 1 cut(s) 445
GluI GCNGC 7 cut(s) 283, 286, 294, 442, 528, 573, 609
GsaI CCCAGC 1 cut(s) 292
HaeIII GGCC 4 cut(s) 29, 33, 509, 608
HapII CCGG 2 cut(s) 30, 485
HhaI GCGC 1 cut(s) 446
Hin1II CATG 2 cut(s) 244, 663
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HindIII AAGCTT 2 cut(s) 102, 113
HinfI GANTC 2 cut(s) 301, 385
HpaII CCGG 2 cut(s) 30, 485
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 300, 325
Hpy188III TCNNGA 3 cut(s) 211, 540, 660
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 90, 282, 367, 527, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 527, 608, 614
HpyF3I CTNAG 4 cut(s) 35, 297, 392, 413
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 244, 663
HspAI GCGC 1 cut(s) 444
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 43, 224, 274, 348, 498, 525, 579
Lsp1109I GCAGC 6 cut(s) 272, 294, 305, 428, 539, 559
LweI GCATC 1 cut(s) 329
MaeI CTAG 2 cut(s) 273, 648
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 156, 371
MboII GAAGA 3 cut(s) 217, 394, 415
MluCI AATT 3 cut(s) 201, 466, 543
MlyI GAGTC 2 cut(s) 310, 379
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 265, 422
MroNI GCCGGC 1 cut(s) 29
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 285, 441
MspCI CTTAAG 1 cut(s) 550
MspI CCGG 2 cut(s) 30, 485
Mva1269I GAATGC 1 cut(s) 556
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 4 cut(s) 10, 527, 608, 614
NaeI GCCGGC 1 cut(s) 31
NcoI CCATGG 1 cut(s) 240
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 244, 663
NmuCI GTSAC 1 cut(s) 156
PagI TCATGA 1 cut(s) 659
PctI GAATGC 1 cut(s) 556
PdiI GCCGGC 1 cut(s) 31
PkrI GCNGC 7 cut(s) 284, 287, 295, 443, 529, 574, 610
PleI GAGTC 2 cut(s) 309, 379
PpsI GAGTC 2 cut(s) 309, 379
PsiI TTATAA 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 288
PvuII CAGCTG 2 cut(s) 285, 441
RigI GGCCGGCC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 7 cut(s) 283, 286, 294, 442, 528, 573, 609
SchI GAGTC 2 cut(s) 310, 379
SetI ASST 9 cut(s) 106, 117, 138, 257, 287, 298, 443, 523, 532
SfaNI GCATC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 3 cut(s) 201, 466, 543
SsiI CCGC 1 cut(s) 609
SspMI CTAG 2 cut(s) 273, 648
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 138
TasI AATT 3 cut(s) 201, 466, 543
TauI GCSGC 1 cut(s) 611
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 311
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 6 cut(s) 282, 285, 293, 441, 527, 572
Tsp45I GTSAC 1 cut(s) 156
TspDTI ATGAA 3 cut(s) 125, 136, 459
TspRI CASTG 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 550
XapI RAATTY 1 cut(s) 543
XspI CTAG 2 cut(s) 273, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.