RchiOBHm_Chr4g0445081

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018034
Physical Location & Seq
Forward (+)
65654190 .. 65655659
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1470 bp
ATGACTTCTTCAGTCCTTCCTACCAATTTATTGGATTTCCGTGACGGCGGTGCTTTCCCGGAGATTCATAAACCTCAGTACCCTCTTGGCATGGGCAAGGAGGGCACCAAGTCCTCAAAGCTCCAATCCAAATCTCTTCCGGTTTCTTTTGATGCATATGGAAACATAGCCTATGATGTCATTGTTAAGCAAAACGAAAATGCCAAAAGAACTGTGTTCTCAAAGCATAAAGACCTTGTGCCTCTAATTTTGACAGACAATGAAGAGGAGGAGAACATGTATAGTGACGAGGAGATGCAGAAGGAGAATGAAAAAACCACAATAGAAACAAAAGCTGCTCTTGAGAAGATTGTTAATGTGAGACTGAGTGCTGCAAGGCCAAAAAGCCAACCGAAACAGACCCAAGACTCGAAACTGATCAAGTACAGACCATCACAGACGTCGGTGGCATTCAACTCTGGTGCTAAGGAGAGGATGATAAGGATGGTGGAGAAGCCTGTGGATCCACTTGAACCTCCCAAGTTTCGGCACAAGCGTGTTCCGTGGGCTCCTGAAGAGCCGCCTGTCCCGGTGCTACATTCTCCTCCTAGGCCGGTGAGTGCGGCTGATAAGAAGGACTGGAGTATTCCGCCTTGTATTTCACAGTTCAAGAACCCGAAAGGGTATACAATCCCATTGGACAAACGCGAAGGGGTTGATGGGAGACGCCTTCAAGATGTTCAGATCAGTGAGAACTTTGCACATCTTCATGACTCTTTGCATGTAGCACTAGTGAAATGTAAGGAGGAACTTGATCTAAGAGAGAGAGTTCAGATGGAGAGGATGGAGAAGGAGCAGGAAAGGAGAAACCAGGAGCTGAGAGATATAGCTCAGAGAGCTCGTGCAGAGAGAACAGCTATTGCTGCTGCTACTCCAGAGCCTAATGGTGAGAAGACGGCAATGGATACTGATGAAACAAAAGAAGAGAGATTGAAGCGGGATGAGATTCGTCGAGAGAGGGAAAGGGAGAGAACGTTGACAAAGAATAAGAGAACAACAGTCACAAGAGATGGCGATCGTGATATCTGTGAGAAAATTGCTCTTGGCATGGCTTCTACTGGAGTTGGAGGGGAAAGAGGGGAAGAGGTTATGTATGACCAAAGGTTGTTTAGCCAGCAGAAAGGAATGCACTCTGGGTTTGGCAATGATGACCAGTACAATGTCTACGAGAAGCGCTTGTTTACTGCTCAGTCTACACTCTCGAGCCTGTACAGGCCTAAGAAGGATGTAGATGCTGATACCTATGGAGGTGCTGATGAGCAGTTGGATAAGATCATGAAGACTGATCGCTTCAAACCTCACAATGGATTTGGAGGAACTACTGAAAGGGCAGGTCCGAGAGATAGACCGGTTGAGTTTGATCAGGATGTTAAAGAAGCTGATCCCTTTGGTCTTGACGAGATAATGGCAAAGATGAACAAGGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

489

Amino Acids

55.84

Weight (kDa)

7.67

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKIP_SNW PF02731 139 - 297 7.1e-57 SKIP/SNW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018034)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35450
rosa_chinensis RchiOBHm_Chr4g0445081
rosa_laevigata RLG00000005769
rosa_multiflora Rmu_sc0003784.1_g000006 Rmu_sc0029783.1_g000010
rosa_roxburghii Rroxscaffold_5G00385620
rosa_rugosa Rorug04G0358800
rosa_samantha Rh4BG431400 Rh4CG445900 Rh4DG427500
rosa_wichuraiana Rw4G035960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 1361
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 3 cut(s) 665, 1203, 1232
AccII CGCG 1 cut(s) 687
AciI CCGC 5 cut(s) 48, 560, 602, 629, 976
AclI AACGTT 1 cut(s) 1013
AclWI GGATC 3 cut(s) 497, 510, 1415
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 2 cut(s) 440, 706
AfaI GTAC 4 cut(s) 80, 425, 1196, 1250
AfeI AGCGCT 1 cut(s) 1214
AfiI CCNNNNNNNGG 2 cut(s) 525, 1343
AflIII ACRYGT 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 1387
AgsI TTSAA 6 cut(s) 454, 512, 649, 713, 973, 1333
AhlI ACTAGT 1 cut(s) 769
AjnI CCWGG 1 cut(s) 849
AleI CACNNNNGTG 1 cut(s) 534
AluBI AGCT 7 cut(s) 121, 335, 856, 869, 878, 896, 1418
AluI AGCT 7 cut(s) 121, 335, 856, 869, 878, 896, 1418
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 2 cut(s) 355, 697
AlwI GGATC 3 cut(s) 497, 510, 1415
AlwNI CAGNNNCTG 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 1240
Aor51HI AGCGCT 1 cut(s) 1214
AoxI GGCC 3 cut(s) 377, 590, 1253
ApeKI GCWGC 4 cut(s) 335, 371, 902, 905
AsiGI ACCGGT 1 cut(s) 1387
AspA2I CCTAGG 1 cut(s) 587
AspLEI GCGC 1 cut(s) 1215
AspS9I GGNCC 1 cut(s) 1373
AsuC2I CCSGG 2 cut(s) 59, 569
AsuHPI GGTGA 2 cut(s) 607, 938
AvaI CYCGRG 1 cut(s) 1240
AvaII GGWCC 1 cut(s) 1373
AvrII CCTAGG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 107
BaeI ACNNNNGTAYC 2 cut(s) 62, 95
BamHI GGATCC 1 cut(s) 502
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 550, 880
BauI CACGAG 1 cut(s) 879
BbsI GAAGAC 2 cut(s) 938, 1325
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 4 cut(s) 322, 358, 889, 892
BccI CCATC 6 cut(s) 439, 478, 692, 808, 817, 1043
BceAI ACGGC 2 cut(s) 61, 951
BciT130I CCWGG 1 cut(s) 851
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 2 cut(s) 417, 1399
BcnI CCSGG 2 cut(s) 59, 569
BcoDI GTCTC 2 cut(s) 355, 697
BcuI ACTAGT 1 cut(s) 769
BfaI CTAG 2 cut(s) 588, 770
BfoI RGCGCY 1 cut(s) 1216
BfuAI ACCTGC 1 cut(s) 1361
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 6 cut(s) 336, 372, 560, 603, 903, 906
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 6 cut(s) 337, 373, 561, 604, 904, 907
Bme1390I CCNGG 3 cut(s) 59, 569, 851
Bme18I GGWCC 1 cut(s) 1373
BmeT110I CYCGRG 1 cut(s) 1240
BmgT120I GGNCC 1 cut(s) 1373
BmiI GGNNCC 3 cut(s) 106, 504, 549
BmrFI CCNGG 3 cut(s) 59, 569, 851
BmsI GCATC 3 cut(s) 142, 285, 1261
BpiI GAAGAC 2 cut(s) 938, 1325
BpmI CTGGAG 3 cut(s) 640, 897, 1119
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 59, 569
BsaBI GATNNNNATC 1 cut(s) 1053
BsaHI GRCGYC 2 cut(s) 440, 706
BsaJI CCNNGG 2 cut(s) 542, 587
BsaWI WCCGGW 2 cut(s) 139, 1387
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 998, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 1343
Bse118I RCCGGY 2 cut(s) 592, 1387
Bse1I ACTGG 3 cut(s) 623, 1102, 1192
Bse3DI GCAATG 2 cut(s) 945, 1189
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 2 cut(s) 542, 587
BseGI GGATG 6 cut(s) 480, 489, 828, 985, 1270, 1411
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 2 cut(s) 525, 1343
BseMI GCAATG 2 cut(s) 945, 1189
BseMII CTCAG 5 cut(s) 89, 356, 848, 884, 1241
BseNI ACTGG 3 cut(s) 623, 1102, 1192
BseRI GAGGAG 4 cut(s) 281, 284, 305, 573
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 4 cut(s) 322, 358, 889, 892
BsgI GTGCAG 1 cut(s) 903
Bsh1236I CGCG 1 cut(s) 687
Bsh1285I CGRYCG 1 cut(s) 1057
BshFI GGCC 3 cut(s) 379, 592, 1255
BshNI GGYRCC 1 cut(s) 104
BshTI ACCGGT 1 cut(s) 1387
BsiEI CGRYCG 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 1240
BsiSI CCGG 5 cut(s) 59, 140, 569, 593, 1388
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 525, 1343
BsmAI GTCTC 2 cut(s) 355, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 2 cut(s) 449, 1170
BsnI GGCC 3 cut(s) 379, 592, 1255
BsoBI CYCGRG 1 cut(s) 1240
Bsp1286I GDGCHC 3 cut(s) 107, 550, 880
Bsp1407I TGTACA 1 cut(s) 1248
Bsp143I GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
BspACI CCGC 5 cut(s) 48, 560, 602, 629, 976
BspANI GGCC 3 cut(s) 379, 592, 1255
BspCNI CTCAG 5 cut(s) 88, 357, 849, 883, 1240
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 2 cut(s) 748, 1314
BspLI GGNNCC 3 cut(s) 106, 504, 549
BspMI ACCTGC 1 cut(s) 1361
BspPI GGATC 3 cut(s) 497, 510, 1415
BspQI GCTCTTC 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 945, 1189
BsrFI RCCGGY 2 cut(s) 592, 1387
BsrGI TGTACA 1 cut(s) 1248
BsrI ACTGG 3 cut(s) 623, 1102, 1192
BssAI RCCGGY 2 cut(s) 592, 1387
BssECI CCNNGG 2 cut(s) 542, 587
BssMI GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
BssNAI GTATAC 1 cut(s) 666
BssNI GRCGYC 2 cut(s) 440, 706
BssSI CACGAG 1 cut(s) 879
BssT1I CCWWGG 1 cut(s) 587
Bst1107I GTATAC 1 cut(s) 666
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 3 cut(s) 214, 645, 1039
Bst6I CTCTTC 5 cut(s) 141, 258, 549, 957, 1116
BstACI GRCGYC 2 cut(s) 440, 706
BstAUI TGTACA 1 cut(s) 1248
BstC8I GCNNGC 1 cut(s) 1154
BstDEI CTNAG 8 cut(s) 75, 365, 465, 797, 857, 870, 1227, 1257
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 6 cut(s) 480, 489, 828, 985, 1270, 1411
BstFNI CGCG 1 cut(s) 687
BstH2I RGCGCY 1 cut(s) 1216
BstHHI GCGC 1 cut(s) 1215
BstKTI GATC 9 cut(s) 420, 505, 726, 796, 1057, 1314, 1327, 1402, 1423
BstMAI GTCTC 2 cut(s) 355, 697
BstMBI GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
BstMCI CGRYCG 1 cut(s) 1057
BstMWI GCNNNNNNNGC 3 cut(s) 102, 875, 902
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 2 cut(s) 280, 764
BstSCI CCNGG 3 cut(s) 57, 567, 849
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 4 cut(s) 322, 358, 889, 892
BstV2I GAAGAC 2 cut(s) 938, 1325
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 502
BstZ17I GTATAC 1 cut(s) 666
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 3 cut(s) 379, 592, 1255
BtgI CCRYGG 1 cut(s) 542
BtsCI GGATG 6 cut(s) 480, 489, 828, 985, 1270, 1411
BtsIMutI CAGTG 1 cut(s) 733
BveI ACCTGC 1 cut(s) 1361
Cac8I GCNNGC 1 cut(s) 1154
CaiI CAGNNNCTG 1 cut(s) 856
CciI TCATGA 2 cut(s) 748, 1314
CfoI GCGC 1 cut(s) 1215
Cfr10I RCCGGY 2 cut(s) 592, 1387
Cfr13I GGNCC 1 cut(s) 1373
CseI GACGC 1 cut(s) 714
Csp6I GTAC 4 cut(s) 79, 424, 1195, 1249
CspAI ACCGGT 1 cut(s) 1387
CviAII CATG 6 cut(s) 91, 277, 749, 761, 1087, 1315
CviQI GTAC 4 cut(s) 79, 424, 1195, 1249
DdeI CTNAG 8 cut(s) 75, 365, 465, 797, 857, 870, 1227, 1257
DpnI GATC 9 cut(s) 419, 504, 725, 795, 1056, 1313, 1326, 1401, 1422
DpnII GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
Eam1104I CTCTTC 5 cut(s) 141, 258, 549, 957, 1116
EarI CTCTTC 5 cut(s) 141, 258, 549, 957, 1116
EciI GGCGGA 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 878
Eco130I CCWWGG 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 1255
Eco24I GRGCYC 2 cut(s) 550, 880
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 1 cut(s) 1373
Eco47III AGCGCT 1 cut(s) 1214
Eco53kI GAGCTC 1 cut(s) 878
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 1240
EcoICRI GAGCTC 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 849
EcoRV GATATC 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 550, 880
ErhI CCWWGG 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 6 cut(s) 94, 280, 752, 764, 1090, 1318
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 551
FatI CATG 6 cut(s) 90, 276, 748, 760, 1086, 1314
FauI CCCGC 1 cut(s) 969
FauNDI CATATG 1 cut(s) 157
FbaI TGATCA 2 cut(s) 417, 1399
FblI GTMKAC 3 cut(s) 665, 1203, 1232
Fnu4HI GCNGC 6 cut(s) 336, 372, 560, 603, 903, 906
FokI GGATG 6 cut(s) 487, 496, 835, 992, 1277, 1418
FriOI GRGCYC 2 cut(s) 550, 880
Fsp4HI GCNGC 6 cut(s) 336, 372, 560, 603, 903, 906
FspBI CTAG 2 cut(s) 588, 770
GlaI GCGC 1 cut(s) 1214
GluI GCNGC 6 cut(s) 336, 372, 560, 603, 903, 906
GsuI CTGGAG 3 cut(s) 640, 897, 1119
HaeII RGCGCY 1 cut(s) 1216
HaeIII GGCC 3 cut(s) 379, 592, 1255
HapII CCGG 5 cut(s) 59, 140, 569, 593, 1388
HgaI GACGC 1 cut(s) 714
HhaI GCGC 1 cut(s) 1215
Hin1I GRCGYC 2 cut(s) 440, 706
Hin1II CATG 6 cut(s) 94, 280, 752, 764, 1090, 1318
Hin6I GCGC 1 cut(s) 1213
HinP1I GCGC 1 cut(s) 1213
HincII GTYRAC 1 cut(s) 1017
HindII GTYRAC 1 cut(s) 1017
HinfI GANTC 4 cut(s) 64, 407, 752, 985
HpaII CCGG 5 cut(s) 59, 140, 569, 593, 1388
HphI GGTGA 2 cut(s) 607, 938
Hpy166II GTNNAC 5 cut(s) 666, 1017, 1204, 1221, 1233
Hpy188I TCNGA 4 cut(s) 723, 813, 873, 1377
Hpy8I GTNNAC 5 cut(s) 666, 1017, 1204, 1221, 1233
Hpy99I CGWCG 2 cut(s) 445, 993
HpyAV CCTTC 7 cut(s) 26, 295, 607, 683, 719, 823, 1255
HpyCH4III ACNGT 3 cut(s) 214, 645, 1039
HpyCH4IV ACGT 2 cut(s) 440, 1013
HpyCH4V TGCA 7 cut(s) 155, 298, 374, 740, 760, 884, 1168
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 875, 902
HpyF3I CTNAG 8 cut(s) 75, 365, 465, 797, 857, 870, 1227, 1257
HpySE526I ACGT 2 cut(s) 440, 1013
Hsp92I GRCGYC 2 cut(s) 440, 706
Hsp92II CATG 6 cut(s) 94, 280, 752, 764, 1090, 1318
HspAI GCGC 1 cut(s) 1213
Ksp22I TGATCA 2 cut(s) 417, 1399
Kzo9I GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 4 cut(s) 126, 553, 832, 853
Lsp1109I GCAGC 4 cut(s) 322, 358, 889, 892
LweI GCATC 3 cut(s) 142, 285, 1261
MaeI CTAG 2 cut(s) 588, 770
MaeII ACGT 2 cut(s) 440, 1013
MaeIII GTNAC 3 cut(s) 41, 284, 1039
MalI GATC 9 cut(s) 419, 504, 725, 795, 1056, 1313, 1326, 1401, 1422
MboI GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
MboII GAAGA 9 cut(s) 128, 275, 358, 566, 737, 943, 974, 1133, 1330
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 107, 550, 880
MluCI AATT 3 cut(s) 25, 246, 1074
MlyI GAGTC 2 cut(s) 401, 746
MmeI TCCRAC 2 cut(s) 1084, 1284
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 3 cut(s) 186, 354, 1410
MslI CAYNNNNRTG 2 cut(s) 534, 747
MspI CCGG 5 cut(s) 59, 140, 569, 593, 1388
MspR9I CCNGG 3 cut(s) 59, 569, 851
Mva1269I GAATGC 2 cut(s) 449, 1170
MvaI CCWGG 1 cut(s) 851
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 3 cut(s) 102, 875, 902
NciI CCSGG 2 cut(s) 59, 569
NdeI CATATG 1 cut(s) 157
NdeII GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
NlaIII CATG 6 cut(s) 94, 280, 752, 764, 1090, 1318
NlaIV GGNNCC 3 cut(s) 106, 504, 549
NmuCI GTSAC 3 cut(s) 41, 284, 1039
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 2 cut(s) 280, 764
OliI CACNNNNGTG 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 1240
PagI TCATGA 2 cut(s) 748, 1314
PceI AGGCCT 1 cut(s) 1255
PciI ACATGT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PctI GAATGC 2 cut(s) 449, 1170
PfeI GAWTC 2 cut(s) 64, 985
PfoI TCCNGGA 1 cut(s) 57
PinAI ACCGGT 1 cut(s) 1387
PkrI GCNGC 6 cut(s) 337, 373, 561, 604, 904, 907
Ple19I CGATCG 1 cut(s) 1057
PleI GAGTC 2 cut(s) 401, 746
PpsI GAGTC 2 cut(s) 401, 746
PscI ACATGT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 880
Psp1406I AACGTT 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 849
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 3 cut(s) 106, 504, 549
PspPI GGNCC 1 cut(s) 1373
PstNI CAGNNNCTG 1 cut(s) 856
PsuI RGATCY 1 cut(s) 502
PvuI CGATCG 1 cut(s) 1057
RsaI GTAC 4 cut(s) 80, 425, 1196, 1250
RsaNI GTAC 4 cut(s) 79, 424, 1195, 1249
RseI CAYNNNNRTG 2 cut(s) 534, 747
SacI GAGCTC 1 cut(s) 880
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 3 cut(s) 186, 354, 1410
SatI GCNGC 6 cut(s) 336, 372, 560, 603, 903, 906
Sau3AI GATC 9 cut(s) 417, 502, 723, 793, 1054, 1311, 1324, 1399, 1420
Sau96I GGNCC 1 cut(s) 1373
SchI GAGTC 2 cut(s) 401, 746
ScrFI CCNGG 3 cut(s) 59, 569, 851
SduI GDGCHC 3 cut(s) 107, 550, 880
SfaNI GCATC 3 cut(s) 142, 285, 1261
Sfr274I CTCGAG 1 cut(s) 1240
SinI GGWCC 1 cut(s) 1373
SlaI CTCGAG 1 cut(s) 1240
SmiMI CAYNNNNRTG 2 cut(s) 534, 747
SmlI CTYRAG 2 cut(s) 341, 1240
SmoI CTYRAG 2 cut(s) 341, 1240
SpeI ACTAGT 1 cut(s) 769
Sse9I AATT 3 cut(s) 25, 246, 1074
SseBI AGGCCT 1 cut(s) 1255
SsiI CCGC 5 cut(s) 48, 560, 602, 629, 976
SspMI CTAG 2 cut(s) 588, 770
SstI GAGCTC 1 cut(s) 880
StuI AGGCCT 1 cut(s) 1255
StyD4I CCNGG 3 cut(s) 57, 567, 849
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 3 cut(s) 214, 645, 1039
TaiI ACGT 2 cut(s) 443, 1016
TaqI TCGA 3 cut(s) 410, 991, 1241
TasI AATT 3 cut(s) 25, 246, 1074
TatI WGTACW 3 cut(s) 423, 1194, 1248
TauI GCSGC 2 cut(s) 562, 605
TfiI GAWTC 2 cut(s) 64, 985
Tru1I TTAA 3 cut(s) 186, 354, 1410
Tru9I TTAA 3 cut(s) 186, 354, 1410
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 3 cut(s) 41, 284, 1039
TseI GCWGC 4 cut(s) 335, 371, 902, 905
Tsp45I GTSAC 3 cut(s) 41, 284, 1039
TspDTI ATGAA 7 cut(s) 56, 276, 324, 737, 966, 1331, 1469
TspGWI ACGGA 2 cut(s) 29, 531
TspRI CASTG 1 cut(s) 733
VpaK11BI GGWCC 1 cut(s) 1373
XceI RCATGY 2 cut(s) 280, 764
XhoI CTCGAG 1 cut(s) 1240
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 3 cut(s) 665, 1203, 1232
XspI CTAG 2 cut(s) 588, 770
ZraI GACGTC 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.