Rroxscaffold_5G00385620

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018034
Physical Location & Seq
Forward (+)
64661257 .. 64663183
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385620.1

Sequence Viewer

Length: 1380 bp
ATGACTTCTTCAGTCCTTCCTACCAATGTACTGGATTTCCGTGACGGCGGTGCTTTCCCGGAGATTCATAAACCTCAGTACCCTCTTGGCATGGGCAAGGAGGACACCAAGTCCTCAAAGCCCCAATCCAAAACTCTTCCGGTTTCTTTTGATGCATATGGAAACATAGCCTATGATGCCATTGTTAAGCAAAACGAAGATGCCAAAAGAACTGTGTTCTCAAAGCATAAAGACCTTGTGCCTATAATTTTGACAGACAATGAAGAGGAGGAGAACATGTATAGTGACGAGGAGATGCAGAAGGAGATTGAAAAAACCACAGTAGAAACAAAAGCTGCTTTTGAGAAGATTGTTAATACGTCGGTGGCATTCAACTCTTGTGCTAAGGAGAGGATGATAAGGATGGTGGAGAAGCCTGTGGATCCACTTGAACCTCCCAAGTTTCGGCACAAGCGTGTTCCGAGGGCTTCTGAAGAGCCGCCTGTCCCGGTGCTACATTCTCCTCTTAGGCCGGTGAGTGCGGCTGATAAGAAGGACTGGAGTATTCCGCCTTGTATTTCACAGTTCAAGAACCCGAAAGGGTATACAACCCCATTGGACAAACGCGAAGGGGTTGATGGGAGGCGCCTTCAAGATAGCGAGAGTTCAGATGGAGAGGATGGAGAAGGAGCAGGAAAGGAGAAACCAGGAGCTGAGAGATATAGCTCAGAGAGCTCGTGCAGAGAGAACAGGAGAAACCAGGAGCTGAGAGATATAGCTCAGAGAGCTCGTGCAGAGAGAACAGCTATTGCTGCTGCTATTCCAGAGCCTAATGGTGAGAAGACAGCAATGGATACTGATGAAACAAAAGAAGAGAGATTGAAGCGGGATGTGATTCGTCGAGAGAGGGAAAGTGAGAGAAGGTTGACAAAGAATAAGAGAACTAGAGTCACAAGAGATGGCGATCGTGATATCAGTGAGAAAATTGCTCTTGGCATGGCTTCTACCGGAGTTGGAGGGGAAAGAGGGGAAGAGGTTATGTATGACCAGAGGCTTAAGAAGGATGTTGATGCTGATACCTATGGAGGTGTTGATGAGCAGTTCGATAAGATCATTAAGTCTGATCGCTTCAAACCTCACAAAGGATTTGGAGGAACTACCGAAACGGCAGGTCCGAGAGATAGACCGGTTGAGTTTGATCAGGATGTTAAAGATGCTGATCCCTTTGGTCTTGACGAGATAATGGCAAAGATGAAGAAGGCAAGTAAGTTAATGGAACCAGAGTCGTTGGAAAACATAAGATTGTTATCGAATCAATATGGACTTCCAGAAAGCAAGGATACTTTATTTAACGTAGTTCCAGACCTGTCAACCGTCCGATTGAAGTCGGACGGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

459

Amino Acids

51.61

Weight (kDa)

5.58

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKIP_SNW PF02731 123 - 216 4.8e-35 SKIP/SNW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018034)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35450
rosa_chinensis RchiOBHm_Chr4g0445081
rosa_laevigata RLG00000005769
rosa_multiflora Rmu_sc0003784.1_g000006 Rmu_sc0029783.1_g000010
rosa_roxburghii Rroxscaffold_5G00385620
rosa_rugosa Rorug04G0358800
rosa_samantha Rh4BG431400 Rh4CG445900 Rh4DG427500
rosa_wichuraiana Rw4G035960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1139
AccB1I GGYRCC 1 cut(s) 624
AccI GTMKAC 1 cut(s) 584
AccII CGCG 1 cut(s) 606
AciI CCGC 5 cut(s) 48, 479, 521, 548, 865
AclWI GGATC 3 cut(s) 416, 429, 1193
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 625
AfaI GTAC 2 cut(s) 30, 80
AfiI CCNNNNNNNGG 2 cut(s) 444, 1121
AflII CTTAAG 1 cut(s) 1034
AflIII ACRYGT 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 1165
AgsI TTSAA 8 cut(s) 311, 373, 431, 568, 632, 862, 1111, 1363
AhdI GACNNNNNGTC 1 cut(s) 109
AjnI CCWGG 2 cut(s) 685, 738
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 8 cut(s) 335, 692, 705, 714, 745, 758, 767, 785
AluI AGCT 8 cut(s) 335, 692, 705, 714, 745, 758, 767, 785
Alw21I GWGCWC 2 cut(s) 716, 769
AlwI GGATC 3 cut(s) 416, 429, 1193
AlwNI CAGNNNCTG 2 cut(s) 692, 745
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 335, 791, 794
AsiGI ACCGGT 1 cut(s) 1165
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 1151
AsuC2I CCSGG 2 cut(s) 59, 488
AsuHPI GGTGA 2 cut(s) 526, 827
AvaII GGWCC 1 cut(s) 1151
BaeI ACNNNNGTAYC 2 cut(s) 62, 95
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 2 cut(s) 716, 769
BauI CACGAG 2 cut(s) 715, 768
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 2 cut(s) 716, 769
BbvI GCAGC 3 cut(s) 322, 778, 781
BccI CCATC 5 cut(s) 397, 611, 644, 653, 932
BceAI ACGGC 2 cut(s) 61, 1161
BciT130I CCWGG 2 cut(s) 687, 740
BciVI GTATCC 2 cut(s) 826, 1312
BclI TGATCA 1 cut(s) 1177
BcnI CCSGG 2 cut(s) 59, 488
BfaI CTAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 628
BfrI CTTAAG 1 cut(s) 1034
BfuAI ACCTGC 1 cut(s) 1139
BfuI GTATCC 2 cut(s) 826, 1312
BisI GCNGC 5 cut(s) 336, 479, 522, 792, 795
BlsI GCNGC 5 cut(s) 337, 480, 523, 793, 796
Bme1390I CCNGG 4 cut(s) 59, 488, 687, 740
Bme18I GGWCC 1 cut(s) 1151
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 1151
BmiI GGNNCC 3 cut(s) 423, 626, 1257
BmrFI CCNGG 4 cut(s) 59, 488, 687, 740
BmsI GCATC 6 cut(s) 142, 166, 190, 285, 1039, 1183
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 559
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 59, 488
BsaBI GATNNNNATC 3 cut(s) 942, 1197, 1285
BsaHI GRCGYC 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 3 cut(s) 139, 986, 1165
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 1121
Bse118I RCCGGY 2 cut(s) 511, 1165
Bse1I ACTGG 2 cut(s) 36, 542
Bse3DI GCAATG 1 cut(s) 834
Bse8I GATNNNNATC 3 cut(s) 942, 1197, 1285
BseBI CCWGG 2 cut(s) 687, 740
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 6 cut(s) 399, 408, 664, 874, 1048, 1189
BseJI GATNNNNATC 3 cut(s) 942, 1197, 1285
BseLI CCNNNNNNNGG 2 cut(s) 444, 1121
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 5 cut(s) 89, 684, 720, 737, 773
BseNI ACTGG 2 cut(s) 36, 542
BseRI GAGGAG 4 cut(s) 281, 284, 305, 492
BseXI GCAGC 3 cut(s) 322, 778, 781
BsgI GTGCAG 2 cut(s) 739, 792
Bsh1236I CGCG 1 cut(s) 606
Bsh1285I CGRYCG 1 cut(s) 946
BshFI GGCC 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 624
BshTI ACCGGT 1 cut(s) 1165
BsiEI CGRYCG 1 cut(s) 946
BsiHKAI GWGCWC 2 cut(s) 716, 769
BsiSI CCGG 6 cut(s) 59, 140, 488, 512, 987, 1166
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 444, 1121
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 716, 769
Bsp143I GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
BspACI CCGC 5 cut(s) 48, 479, 521, 548, 865
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 5 cut(s) 88, 685, 719, 738, 772
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 423, 626, 1257
BspMI ACCTGC 1 cut(s) 1139
BspPI GGATC 3 cut(s) 416, 429, 1193
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 1 cut(s) 624
BspTI CTTAAG 1 cut(s) 1034
BsrDI GCAATG 1 cut(s) 834
BsrFI RCCGGY 2 cut(s) 511, 1165
BsrI ACTGG 2 cut(s) 36, 542
BssAI RCCGGY 2 cut(s) 511, 1165
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
BssNAI GTATAC 1 cut(s) 585
BssNI GRCGYC 1 cut(s) 625
BssSI CACGAG 2 cut(s) 715, 768
Bst1107I GTATAC 1 cut(s) 585
Bst2BI CACGAG 2 cut(s) 715, 768
Bst2UI CCWGG 2 cut(s) 687, 740
Bst4CI ACNGT 5 cut(s) 214, 322, 564, 1354, 1373
Bst6I CTCTTC 5 cut(s) 141, 258, 468, 846, 1005
BstACI GRCGYC 1 cut(s) 625
BstAFI CTTAAG 1 cut(s) 1034
BstDEI CTNAG 7 cut(s) 75, 384, 506, 693, 706, 746, 759
BstENI CCTNNNNNAGG 1 cut(s) 1119
BstF5I GGATG 6 cut(s) 399, 408, 664, 874, 1048, 1189
BstFNI CGCG 1 cut(s) 606
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 6 cut(s) 424, 946, 1092, 1105, 1180, 1201
BstMBI GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
BstMCI CGRYCG 1 cut(s) 946
BstMWI GCNNNNNNNGC 4 cut(s) 176, 711, 764, 791
BstNI CCWGG 2 cut(s) 687, 740
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 4 cut(s) 57, 486, 685, 738
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 3 cut(s) 322, 778, 781
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 421
BstZ17I GTATAC 1 cut(s) 585
BsuI GTATCC 2 cut(s) 826, 1312
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 6 cut(s) 399, 408, 664, 874, 1048, 1189
BtsIMutI CAGTG 1 cut(s) 961
BveI ACCTGC 1 cut(s) 1139
CaiI CAGNNNCTG 2 cut(s) 692, 745
CfoI GCGC 1 cut(s) 627
Cfr10I RCCGGY 2 cut(s) 511, 1165
Cfr13I GGNCC 1 cut(s) 1151
Csp6I GTAC 2 cut(s) 29, 79
CspAI ACCGGT 1 cut(s) 1165
CviAII CATG 3 cut(s) 91, 277, 976
CviQI GTAC 2 cut(s) 29, 79
DdeI CTNAG 7 cut(s) 75, 384, 506, 693, 706, 746, 759
DinI GGCGCC 1 cut(s) 626
DpnI GATC 6 cut(s) 423, 945, 1091, 1104, 1179, 1200
DpnII GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
DriI GACNNNNNGTC 1 cut(s) 109
Eam1104I CTCTTC 5 cut(s) 141, 258, 468, 846, 1005
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 5 cut(s) 141, 258, 468, 846, 1005
EciI GGCGGA 1 cut(s) 537
Ecl136II GAGCTC 2 cut(s) 714, 767
Eco24I GRGCYC 2 cut(s) 716, 769
Eco32I GATATC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 1151
Eco53kI GAGCTC 2 cut(s) 714, 767
Eco57I CTGAAG 1 cut(s) 492
EcoICRI GAGCTC 2 cut(s) 714, 767
EcoNI CCTNNNNNAGG 1 cut(s) 1119
EcoRII CCWGG 2 cut(s) 685, 738
EcoRV GATATC 1 cut(s) 952
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 716, 769
EgeI GGCGCC 1 cut(s) 626
EheI GGCGCC 1 cut(s) 626
FaeI CATG 3 cut(s) 94, 280, 979
FaqI GGGAC 1 cut(s) 470
FatI CATG 3 cut(s) 90, 276, 975
FauI CCCGC 1 cut(s) 858
FauNDI CATATG 1 cut(s) 157
FbaI TGATCA 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 5 cut(s) 336, 479, 522, 792, 795
FokI GGATG 6 cut(s) 406, 415, 671, 881, 1055, 1196
FriOI GRGCYC 2 cut(s) 716, 769
Fsp4HI GCNGC 5 cut(s) 336, 479, 522, 792, 795
FspBI CTAG 1 cut(s) 924
GlaI GCGC 1 cut(s) 626
GluI GCNGC 5 cut(s) 336, 479, 522, 792, 795
GsuI CTGGAG 1 cut(s) 559
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 1 cut(s) 511
HapII CCGG 6 cut(s) 59, 140, 488, 512, 987, 1166
HhaI GCGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 625
Hin1II CATG 3 cut(s) 94, 280, 979
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 2 cut(s) 906, 1350
HindII GTYRAC 2 cut(s) 906, 1350
HinfI GANTC 5 cut(s) 64, 874, 927, 1262, 1291
HpaII CCGG 6 cut(s) 59, 140, 488, 512, 987, 1166
HphI GGTGA 2 cut(s) 526, 827
Hpy166II GTNNAC 3 cut(s) 585, 906, 1350
Hpy188I TCNGA 9 cut(s) 462, 472, 649, 709, 762, 1102, 1155, 1358, 1369
Hpy188III TCNNGA 9 cut(s) 568, 632, 803, 881, 947, 1181, 1211, 1307, 1340
Hpy8I GTNNAC 3 cut(s) 585, 906, 1350
Hpy99I CGWCG 2 cut(s) 364, 882
HpyAV CCTTC 9 cut(s) 26, 295, 526, 602, 638, 659, 894, 1033, 1231
HpyCH4III ACNGT 5 cut(s) 214, 322, 564, 1354, 1373
HpyCH4IV ACGT 2 cut(s) 359, 1332
HpyCH4V TGCA 4 cut(s) 155, 298, 720, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 711, 764, 791
HpyF3I CTNAG 7 cut(s) 75, 384, 506, 693, 706, 746, 759
HpySE526I ACGT 2 cut(s) 359, 1332
Hsp92I GRCGYC 1 cut(s) 625
Hsp92II CATG 3 cut(s) 94, 280, 979
HspAI GCGC 1 cut(s) 625
KasI GGCGCC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 3 cut(s) 668, 689, 742
Lsp1109I GCAGC 3 cut(s) 322, 778, 781
LweI GCATC 6 cut(s) 142, 166, 190, 285, 1039, 1183
MaeI CTAG 1 cut(s) 924
MaeII ACGT 2 cut(s) 359, 1332
MaeIII GTNAC 3 cut(s) 41, 284, 928
MalI GATC 6 cut(s) 423, 945, 1091, 1104, 1179, 1200
MboI GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
MboII GAAGA 9 cut(s) 128, 209, 275, 358, 485, 832, 863, 1022, 1246
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 716, 769
MluCI AATT 2 cut(s) 246, 963
Mly113I GGCGCC 1 cut(s) 625
MlyI GAGTC 2 cut(s) 936, 1271
MmeI TCCRAC 3 cut(s) 973, 1248, 1347
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 7 cut(s) 186, 354, 1035, 1095, 1188, 1250, 1329
MslI CAYNNNNRTG 1 cut(s) 453
MspCI CTTAAG 1 cut(s) 1034
MspI CCGG 6 cut(s) 59, 140, 488, 512, 987, 1166
MspR9I CCNGG 4 cut(s) 59, 488, 687, 740
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 2 cut(s) 687, 740
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 4 cut(s) 176, 711, 764, 791
NarI GGCGCC 1 cut(s) 625
NciI CCSGG 2 cut(s) 59, 488
NdeI CATATG 1 cut(s) 157
NdeII GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
NlaIII CATG 3 cut(s) 94, 280, 979
NlaIV GGNNCC 3 cut(s) 423, 626, 1257
NmuCI GTSAC 3 cut(s) 41, 284, 928
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 453
PciI ACATGT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 2 cut(s) 451, 1151
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 3 cut(s) 64, 874, 1291
PfoI TCCNGGA 1 cut(s) 57
PinAI ACCGGT 1 cut(s) 1165
PkrI GCNGC 5 cut(s) 337, 480, 523, 793, 796
Ple19I CGATCG 1 cut(s) 946
PleI GAGTC 2 cut(s) 935, 1270
PluTI GGCGCC 1 cut(s) 628
PpsI GAGTC 2 cut(s) 935, 1270
PscI ACATGT 1 cut(s) 276
Psp124BI GAGCTC 2 cut(s) 716, 769
Psp6I CCWGG 2 cut(s) 685, 738
PspGI CCWGG 2 cut(s) 685, 738
PspN4I GGNNCC 3 cut(s) 423, 626, 1257
PspPI GGNCC 1 cut(s) 1151
PstNI CAGNNNCTG 2 cut(s) 692, 745
PsuI RGATCY 1 cut(s) 421
PvuI CGATCG 1 cut(s) 946
RsaI GTAC 2 cut(s) 30, 80
RsaNI GTAC 2 cut(s) 29, 79
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 2 cut(s) 716, 769
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 7 cut(s) 186, 354, 1035, 1095, 1188, 1250, 1329
SatI GCNGC 5 cut(s) 336, 479, 522, 792, 795
Sau3AI GATC 6 cut(s) 421, 943, 1089, 1102, 1177, 1198
Sau96I GGNCC 1 cut(s) 1151
SchI GAGTC 2 cut(s) 936, 1271
ScrFI CCNGG 4 cut(s) 59, 488, 687, 740
SduI GDGCHC 2 cut(s) 716, 769
SfaNI GCATC 6 cut(s) 142, 166, 190, 285, 1039, 1183
SfoI GGCGCC 1 cut(s) 626
SinI GGWCC 1 cut(s) 1151
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
Sse9I AATT 2 cut(s) 246, 963
SsiI CCGC 5 cut(s) 48, 479, 521, 548, 865
SspDI GGCGCC 1 cut(s) 624
SspMI CTAG 1 cut(s) 924
SstI GAGCTC 2 cut(s) 716, 769
StyD4I CCNGG 4 cut(s) 57, 486, 685, 738
TaaI ACNGT 5 cut(s) 214, 322, 564, 1354, 1373
TaiI ACGT 2 cut(s) 362, 1335
TaqI TCGA 3 cut(s) 880, 1083, 1289
TasI AATT 2 cut(s) 246, 963
TatI WGTACW 1 cut(s) 28
TauI GCSGC 2 cut(s) 481, 524
TfiI GAWTC 3 cut(s) 64, 874, 1291
Tru1I TTAA 7 cut(s) 186, 354, 1035, 1095, 1188, 1250, 1329
Tru9I TTAA 7 cut(s) 186, 354, 1035, 1095, 1188, 1250, 1329
TscAI CASTG 1 cut(s) 961
TseFI GTSAC 3 cut(s) 41, 284, 928
TseI GCWGC 3 cut(s) 335, 791, 794
Tsp45I GTSAC 3 cut(s) 41, 284, 928
TspDTI ATGAA 4 cut(s) 56, 276, 855, 1247
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 961
Vha464I CTTAAG 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 1151
XagI CCTNNNNNAGG 1 cut(s) 1119
XceI RCATGY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.