Rw4G035960

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0018034
Physical Location & Seq
Forward (+)
62796608 .. 62798185
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035960.1

Sequence Viewer

Length: 1578 bp
ATGGCGGCTCTGCTCCATCGGCTTCCACCTGTGAAATCGACCAGAACAACCTACTACGACCACTCAAACGATCAATGGTTCAAGGAGAGGATCAGTAGTAATACAATGACTTCTTCAGTCCTTCCTACCAATATATTGGATTTCCGTGACGGCGGTACTTTCCCGGAGATTGATAAACCTCAGTACCCTCTTGGCATGGGCAAGGAGGACACCAAGTCCTCAAAGCTCCAATCCAAATCTCTTCCGGTTTCTTTTGATGCATATGGAAACATAGCCTATGATGTCATTGTAGAGCAAAACGAAAATGCCAAAAGAACTGTGTTCTCAAAGCATAAAGACCTTGTGCCTAAAATTTTGACAGACCATGAAGAGGAGGAGAACATGTATAGTGACGAGGAGATGCAGAAGGAGATTGAAAAAACCACAATAGAAACAAAAGCTGCTCTTGAGAAGATTGTTGATGTGAGACTGAGTGCTGCACGGCCAAAAAGCCAACCGAAACAGACCCAAGACTCGAAACTGATCAAGTACAGACCATCACAGACGTCGGTGGCATTCAACTCCGGTGCTAAGGAGAGGATGATAAGGATGGTGGAGAAGCCTGTGGATCCACTTGAACCTCCCAAGTTTCGGCACAAGCGTGTTCCGAGGGCTTCTGAAGAGCCGCCTGTCCCGGTGCTACACTCTCCTCCTAGGCCGGTGAGTGCGGCTGATAAGAAGGACTGGAGTATTCCGCCTCGTATTTCACAGTTCAAGAACCCGAAAGGGTATACAATCCCATTGGACAAACGCGAAGGGGTTGATGGGAGACGCCTTCAACATGTTCAGATCAGTGAGAACTTTGCACATCTTTATGACTCTTTGCATGTAGCACTAGTGAAATGTAAGGAGGAACTTGATCTAAGAGCGAGAGTTCAGATGGAGAGGATGGAGAAGGAGCAGGAAAGGAGAAACCAGGAGCTGAGAGACATAGCTCAGAGAGCTCGTGCAGAGAGAACAGCTATTGCTGCTGCTATTCCAGAGCCTAATGGTGAGAAGAAGGCAATGGATACTGATGAAACAAAAGAAGAGAGATTGACGCGGGATGAGATTCGTCGAGAGAGGGAAAGGGAGAGAAGGTTGACAAAGAATAAGAGAACAAGAGTCACAAGAGATGGCGATCGTGATATCAGTGAGAAAATTGCTCTTGGCATGGCTTCTACTGGAGTTGGAGGGGAAAGAGGGGAAGAGGTTATGTATGACCAAAGGTTGTTTAGCCAGCAGAAAGGAATGGACTCTGGCAACGATGACCAGTACAATGTCTACGAGAAGCGCTTGTTTACTGCTCAGTCTACACTCTCGAGCCTGTACAGGCCTAAGAAGGATGTTGATGCTGATACCTATGGAGGTGCTGATGAGCAGTTGGATAAGATCATGAAGACTGATCGCTTCAAACCTCACAATGGATTTGGAGGAACTACTGAGAGGGCAGGTCCGAGAGATAGACCAGTTGAGCTTGATCAGGATGTTAAAGAAGCTGATCCCTTTGGTCTCGACGAGATAATGGCAAAGATGAAGAAGGCAGGGAGAGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

525

Amino Acids

60.13

Weight (kDa)

8.79

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKIP_SNW PF02731 174 - 332 2.2e-55 SKIP/SNW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018034)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35450
rosa_chinensis RchiOBHm_Chr4g0445081
rosa_laevigata RLG00000005769
rosa_multiflora Rmu_sc0003784.1_g000006 Rmu_sc0029783.1_g000010
rosa_roxburghii Rroxscaffold_5G00385620
rosa_rugosa Rorug04G0358800
rosa_samantha Rh4BG431400 Rh4CG445900 Rh4DG427500
rosa_wichuraiana Rw4G035960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 1460
AccI GTMKAC 3 cut(s) 770, 1302, 1331
AccII CGCG 2 cut(s) 792, 1081
AciI CCGC 6 cut(s) 5, 153, 665, 707, 734, 1081
AclWI GGATC 4 cut(s) 98, 602, 615, 1514
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 2 cut(s) 99, 678
AcyI GRCGYC 2 cut(s) 545, 811
AfaI GTAC 5 cut(s) 157, 185, 530, 1295, 1349
AfeI AGCGCT 1 cut(s) 1313
AfiI CCNNNNNNNGG 3 cut(s) 370, 630, 1442
AflIII ACRYGT 2 cut(s) 381, 820
AgsI TTSAA 7 cut(s) 82, 416, 559, 617, 754, 818, 1432
AhdI GACNNNNNGTC 1 cut(s) 214
AhlI ACTAGT 1 cut(s) 874
AjnI CCWGG 1 cut(s) 954
AleI CACNNNNGTG 1 cut(s) 639
AluBI AGCT 8 cut(s) 226, 440, 961, 974, 983, 1001, 1495, 1517
AluI AGCT 8 cut(s) 226, 440, 961, 974, 983, 1001, 1495, 1517
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 4 cut(s) 460, 802, 960, 1535
AlwI GGATC 4 cut(s) 98, 602, 615, 1514
AlwNI CAGNNNCTG 1 cut(s) 961
Ama87I CYCGRG 1 cut(s) 1339
Aor51HI AGCGCT 1 cut(s) 1313
AoxI GGCC 3 cut(s) 482, 695, 1352
ApeKI GCWGC 4 cut(s) 440, 476, 1007, 1010
ApoI RAATTY 1 cut(s) 351
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 1 cut(s) 1314
AspS9I GGNCC 1 cut(s) 1472
AsuC2I CCSGG 2 cut(s) 164, 674
AsuHPI GGTGA 2 cut(s) 712, 1043
AvaI CYCGRG 1 cut(s) 1339
AvaII GGWCC 1 cut(s) 1472
AvrII CCTAGG 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 167, 200
BamHI GGATCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 985
BauI CACGAG 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 1424
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 4 cut(s) 427, 463, 994, 997
BccI CCATC 7 cut(s) 24, 544, 583, 797, 913, 922, 1148
BceAI ACGGC 2 cut(s) 166, 497
BciT130I CCWGG 1 cut(s) 956
BciVI GTATCC 1 cut(s) 1042
BclI TGATCA 2 cut(s) 522, 1498
BcnI CCSGG 2 cut(s) 164, 674
BcoDI GTCTC 4 cut(s) 460, 802, 960, 1535
BcuI ACTAGT 1 cut(s) 874
BfaI CTAG 2 cut(s) 693, 875
BfoI RGCGCY 1 cut(s) 1315
BfuAI ACCTGC 1 cut(s) 1460
BfuI GTATCC 1 cut(s) 1042
BisI GCNGC 7 cut(s) 6, 441, 477, 665, 708, 1008, 1011
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 7 cut(s) 7, 442, 478, 666, 709, 1009, 1012
Bme1390I CCNGG 3 cut(s) 164, 674, 956
Bme18I GGWCC 1 cut(s) 1472
BmeRI GACNNNNNGTC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 1339
BmgT120I GGNCC 1 cut(s) 1472
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 3 cut(s) 164, 674, 956
BmsI GCATC 3 cut(s) 247, 390, 1360
BpiI GAAGAC 1 cut(s) 1424
BpmI CTGGAG 2 cut(s) 745, 1224
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 164, 674
BsaBI GATNNNNATC 1 cut(s) 1158
BsaHI GRCGYC 2 cut(s) 545, 811
BsaI GGTCTC 1 cut(s) 1535
BsaJI CCNNGG 2 cut(s) 647, 692
BsaWI WCCGGW 2 cut(s) 244, 563
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 1103, 1133
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 630, 1442
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 4 cut(s) 728, 1207, 1291, 1487
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 1 cut(s) 1158
BseBI CCWGG 1 cut(s) 956
BseDI CCNNGG 2 cut(s) 647, 692
BseGI GGATG 6 cut(s) 585, 594, 933, 1090, 1369, 1510
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 3 cut(s) 370, 630, 1442
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 6 cut(s) 194, 461, 953, 989, 1340, 1452
BseNI ACTGG 4 cut(s) 728, 1207, 1291, 1487
BseRI GAGGAG 4 cut(s) 386, 389, 410, 678
BseXI GCAGC 4 cut(s) 427, 463, 994, 997
BsgI GTGCAG 2 cut(s) 462, 1008
Bsh1236I CGCG 2 cut(s) 792, 1081
Bsh1285I CGRYCG 1 cut(s) 1162
BshFI GGCC 3 cut(s) 484, 697, 1354
BsiEI CGRYCG 1 cut(s) 1162
BsiHKAI GWGCWC 1 cut(s) 985
BsiHKCI CYCGRG 1 cut(s) 1339
BsiSI CCGG 5 cut(s) 164, 245, 564, 674, 698
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 370, 630, 1442
BsmAI GTCTC 4 cut(s) 460, 802, 960, 1535
BsmBI CGTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 656
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 3 cut(s) 484, 697, 1354
Bso31I GGTCTC 1 cut(s) 1535
BsoBI CYCGRG 1 cut(s) 1339
Bsp1286I GDGCHC 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 1347
BspACI CCGC 6 cut(s) 5, 153, 665, 707, 734, 1081
BspANI GGCC 3 cut(s) 484, 697, 1354
BspCNI CTCAG 6 cut(s) 193, 462, 954, 988, 1339, 1453
BspFNI CGCG 2 cut(s) 792, 1081
BspHI TCATGA 1 cut(s) 1413
BspLI GGNNCC 1 cut(s) 609
BspMI ACCTGC 1 cut(s) 1460
BspPI GGATC 4 cut(s) 98, 602, 615, 1514
BspQI GCTCTTC 1 cut(s) 654
BspTNI GGTCTC 1 cut(s) 1535
BsrDI GCAATG 1 cut(s) 1050
BsrFI RCCGGY 1 cut(s) 697
BsrGI TGTACA 1 cut(s) 1347
BsrI ACTGG 4 cut(s) 728, 1207, 1291, 1487
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 2 cut(s) 647, 692
BssNAI GTATAC 1 cut(s) 771
BssNI GRCGYC 2 cut(s) 545, 811
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 1 cut(s) 692
Bst1107I GTATAC 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 1 cut(s) 956
Bst4CI ACNGT 2 cut(s) 319, 750
Bst6I CTCTTC 5 cut(s) 246, 363, 654, 1062, 1221
BstACI GRCGYC 2 cut(s) 545, 811
BstAUI TGTACA 1 cut(s) 1347
BstC8I GCNNGC 1 cut(s) 1259
BstDEI CTNAG 9 cut(s) 180, 470, 570, 902, 962, 975, 1326, 1356, 1461
BstF5I GGATG 6 cut(s) 585, 594, 933, 1090, 1369, 1510
BstFNI CGCG 2 cut(s) 792, 1081
BstH2I RGCGCY 1 cut(s) 1315
BstHHI GCGC 1 cut(s) 1314
BstMAI GTCTC 4 cut(s) 460, 802, 960, 1535
BstMCI CGRYCG 1 cut(s) 1162
BstMWI GCNNNNNNNGC 3 cut(s) 19, 980, 1007
BstNI CCWGG 1 cut(s) 956
BstNSI RCATGY 3 cut(s) 385, 824, 869
BstSCI CCNGG 3 cut(s) 162, 672, 954
BstUI CGCG 2 cut(s) 792, 1081
BstV1I GCAGC 4 cut(s) 427, 463, 994, 997
BstV2I GAAGAC 1 cut(s) 1424
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 1 cut(s) 607
BstZ17I GTATAC 1 cut(s) 771
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 3 cut(s) 484, 697, 1354
BtsCI GGATG 6 cut(s) 585, 594, 933, 1090, 1369, 1510
BtsIMutI CAGTG 2 cut(s) 838, 1177
BveI ACCTGC 1 cut(s) 1460
Cac8I GCNNGC 1 cut(s) 1259
CaiI CAGNNNCTG 1 cut(s) 961
CciI TCATGA 1 cut(s) 1413
CfoI GCGC 1 cut(s) 1314
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 1472
CseI GACGC 2 cut(s) 819, 1087
Csp6I GTAC 5 cut(s) 156, 184, 529, 1294, 1348
CviAII CATG 7 cut(s) 196, 365, 382, 821, 866, 1192, 1414
CviQI GTAC 5 cut(s) 156, 184, 529, 1294, 1348
DdeI CTNAG 9 cut(s) 180, 470, 570, 902, 962, 975, 1326, 1356, 1461
DriI GACNNNNNGTC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 5 cut(s) 246, 363, 654, 1062, 1221
Eam1105I GACNNNNNGTC 1 cut(s) 214
EarI CTCTTC 5 cut(s) 246, 363, 654, 1062, 1221
EciI GGCGGA 1 cut(s) 723
Ecl136II GAGCTC 1 cut(s) 983
Eco130I CCWWGG 1 cut(s) 692
Eco147I AGGCCT 1 cut(s) 1354
Eco24I GRGCYC 1 cut(s) 985
Eco31I GGTCTC 1 cut(s) 1535
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 1 cut(s) 1472
Eco47III AGCGCT 1 cut(s) 1313
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 99, 678
Eco88I CYCGRG 1 cut(s) 1339
EcoICRI GAGCTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 954
EcoRV GATATC 1 cut(s) 1168
EcoT14I CCWWGG 1 cut(s) 692
EcoT22I ATGCAT 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 1 cut(s) 692
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 7 cut(s) 199, 368, 385, 824, 869, 1195, 1417
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 656
FatI CATG 7 cut(s) 195, 364, 381, 820, 865, 1191, 1413
FauI CCCGC 1 cut(s) 1074
FauNDI CATATG 1 cut(s) 262
FbaI TGATCA 2 cut(s) 522, 1498
FblI GTMKAC 3 cut(s) 770, 1302, 1331
Fnu4HI GCNGC 7 cut(s) 6, 441, 477, 665, 708, 1008, 1011
FokI GGATG 6 cut(s) 592, 601, 940, 1097, 1376, 1517
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 7 cut(s) 6, 441, 477, 665, 708, 1008, 1011
FspBI CTAG 2 cut(s) 693, 875
GlaI GCGC 1 cut(s) 1313
GluI GCNGC 7 cut(s) 6, 441, 477, 665, 708, 1008, 1011
GsuI CTGGAG 2 cut(s) 745, 1224
HaeII RGCGCY 1 cut(s) 1315
HaeIII GGCC 3 cut(s) 484, 697, 1354
HapII CCGG 5 cut(s) 164, 245, 564, 674, 698
HgaI GACGC 2 cut(s) 819, 1087
HhaI GCGC 1 cut(s) 1314
Hin1I GRCGYC 2 cut(s) 545, 811
Hin1II CATG 7 cut(s) 199, 368, 385, 824, 869, 1195, 1417
Hin6I GCGC 1 cut(s) 1312
HinP1I GCGC 1 cut(s) 1312
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HinfI GANTC 5 cut(s) 512, 857, 1090, 1143, 1274
HpaII CCGG 5 cut(s) 164, 245, 564, 674, 698
HphI GGTGA 2 cut(s) 712, 1043
Hpy166II GTNNAC 5 cut(s) 771, 1122, 1303, 1320, 1332
Hpy188I TCNGA 6 cut(s) 648, 658, 828, 918, 978, 1476
Hpy188III TCNNGA 9 cut(s) 446, 754, 1019, 1097, 1163, 1339, 1414, 1502, 1532
Hpy8I GTNNAC 5 cut(s) 771, 1122, 1303, 1320, 1332
Hpy99I CGWCG 3 cut(s) 550, 1098, 1538
HpyCH4III ACNGT 2 cut(s) 319, 750
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 260, 403, 479, 845, 865, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 980, 1007
HpyF3I CTNAG 9 cut(s) 180, 470, 570, 902, 962, 975, 1326, 1356, 1461
HpySE526I ACGT 1 cut(s) 545
Hsp92I GRCGYC 2 cut(s) 545, 811
Hsp92II CATG 7 cut(s) 199, 368, 385, 824, 869, 1195, 1417
HspAI GCGC 1 cut(s) 1312
Ksp22I TGATCA 2 cut(s) 522, 1498
LguI GCTCTTC 1 cut(s) 654
LmnI GCTCC 4 cut(s) 18, 231, 937, 958
Lsp1109I GCAGC 4 cut(s) 427, 463, 994, 997
LweI GCATC 3 cut(s) 247, 390, 1360
MaeI CTAG 2 cut(s) 693, 875
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 3 cut(s) 146, 389, 1144
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 2 cut(s) 351, 1179
MlyI GAGTC 4 cut(s) 506, 851, 1152, 1268
MmeI TCCRAC 2 cut(s) 1189, 1383
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 1 cut(s) 1509
MslI CAYNNNNRTG 2 cut(s) 639, 852
MspI CCGG 5 cut(s) 164, 245, 564, 674, 698
MspR9I CCNGG 3 cut(s) 164, 674, 956
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 956
MvnI CGCG 2 cut(s) 792, 1081
MwoI GCNNNNNNNGC 3 cut(s) 19, 980, 1007
NciI CCSGG 2 cut(s) 164, 674
NdeI CATATG 1 cut(s) 262
NlaIII CATG 7 cut(s) 199, 368, 385, 824, 869, 1195, 1417
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 3 cut(s) 146, 389, 1144
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 3 cut(s) 385, 824, 869
OliI CACNNNNGTG 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 1339
PagI TCATGA 1 cut(s) 1413
PceI AGGCCT 1 cut(s) 1354
PciI ACATGT 2 cut(s) 381, 820
PciSI GCTCTTC 1 cut(s) 654
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 1090
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 7 cut(s) 7, 442, 478, 666, 709, 1009, 1012
Ple19I CGATCG 1 cut(s) 1162
PleI GAGTC 4 cut(s) 506, 851, 1151, 1268
PpsI GAGTC 4 cut(s) 506, 851, 1151, 1268
PscI ACATGT 2 cut(s) 381, 820
Psp124BI GAGCTC 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 954
PspGI CCWGG 1 cut(s) 954
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 1472
PstNI CAGNNNCTG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 607
PvuI CGATCG 1 cut(s) 1162
RsaI GTAC 5 cut(s) 157, 185, 530, 1295, 1349
RsaNI GTAC 5 cut(s) 156, 184, 529, 1294, 1348
RseI CAYNNNNRTG 2 cut(s) 639, 852
SacI GAGCTC 1 cut(s) 985
SapI GCTCTTC 1 cut(s) 654
SaqAI TTAA 1 cut(s) 1509
SatI GCNGC 7 cut(s) 6, 441, 477, 665, 708, 1008, 1011
Sau96I GGNCC 1 cut(s) 1472
SchI GAGTC 4 cut(s) 506, 851, 1152, 1268
ScrFI CCNGG 3 cut(s) 164, 674, 956
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 3 cut(s) 247, 390, 1360
Sfr274I CTCGAG 1 cut(s) 1339
SinI GGWCC 1 cut(s) 1472
SlaI CTCGAG 1 cut(s) 1339
SmiMI CAYNNNNRTG 2 cut(s) 639, 852
SmlI CTYRAG 2 cut(s) 446, 1339
SmoI CTYRAG 2 cut(s) 446, 1339
SpeI ACTAGT 1 cut(s) 874
Sse9I AATT 2 cut(s) 351, 1179
SseBI AGGCCT 1 cut(s) 1354
SsiI CCGC 6 cut(s) 5, 153, 665, 707, 734, 1081
SspMI CTAG 2 cut(s) 693, 875
SstI GAGCTC 1 cut(s) 985
StuI AGGCCT 1 cut(s) 1354
StyD4I CCNGG 3 cut(s) 162, 672, 954
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 2 cut(s) 319, 750
TaiI ACGT 1 cut(s) 548
TaqI TCGA 5 cut(s) 38, 515, 1096, 1340, 1533
TasI AATT 2 cut(s) 351, 1179
TatI WGTACW 3 cut(s) 528, 1293, 1347
TauI GCSGC 3 cut(s) 8, 667, 710
TfiI GAWTC 1 cut(s) 1090
Tru1I TTAA 1 cut(s) 1509
Tru9I TTAA 1 cut(s) 1509
TscAI CASTG 2 cut(s) 838, 1177
TseFI GTSAC 3 cut(s) 146, 389, 1144
TseI GCWGC 4 cut(s) 440, 476, 1007, 1010
Tsp45I GTSAC 3 cut(s) 146, 389, 1144
TspDTI ATGAA 4 cut(s) 381, 1071, 1430, 1568
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 2 cut(s) 838, 1177
VpaK11BI GGWCC 1 cut(s) 1472
XapI RAATTY 1 cut(s) 351
XceI RCATGY 3 cut(s) 385, 824, 869
XhoI CTCGAG 1 cut(s) 1339
XmaJI CCTAGG 1 cut(s) 692
XmiI GTMKAC 3 cut(s) 770, 1302, 1331
XspI CTAG 2 cut(s) 693, 875
ZraI GACGTC 1 cut(s) 546
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.